Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 C 1.50705 * 109.47086 * 239.99987 * 2 1 3 5 5 H 1.07999 * 119.99617 * 245.46539 * 4 2 1 6 6 C 1.37869 * 119.99976 * 65.46353 * 4 2 1 7 7 N 1.31520 * 120.00216 * 9.59285 * 6 4 2 8 8 Si 1.86803 * 120.00066 * 189.59529 * 6 4 2 9 9 H 1.48502 * 109.46881 * 84.99100 * 8 6 4 10 10 H 1.48498 * 109.47012 * 204.99393 * 8 6 4 11 11 H 1.48502 * 109.47072 * 324.99658 * 8 6 4 12 12 C 1.50698 * 109.46973 * 119.99963 * 2 1 3 13 13 C 1.38229 * 119.98957 * 60.02354 * 12 2 1 14 14 C 1.38397 * 120.01291 * 179.97438 * 13 12 2 15 15 F 1.35099 * 120.00416 * 180.02562 * 14 13 12 16 16 C 1.38585 * 119.98567 * 0.02562 * 14 13 12 17 17 Cl 1.73600 * 120.00743 * 179.97438 * 16 14 13 18 18 C 1.38257 * 119.98061 * 359.97438 * 16 14 13 19 19 C 1.38432 * 119.98839 * 239.99875 * 12 2 1 20 20 F 1.35096 * 119.99178 * 359.72833 * 19 12 2 21 21 H 1.09000 * 109.46993 * 63.26409 * 1 2 3 22 22 H 1.09001 * 109.47166 * 183.26320 * 1 2 3 23 23 H 1.08999 * 109.47362 * 303.25858 * 1 2 3 24 24 H 0.96997 * 120.00003 * 180.02562 * 7 6 4 25 25 H 1.07994 * 119.99414 * 0.02562 * 13 12 2 26 26 H 1.08000 * 120.00857 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.3000 1.0359 -2.5935 8 14 2.1751 -1.1785 -4.0101 9 1 1.0224 -2.0607 -4.3236 10 1 2.4221 -0.2621 -5.1522 11 1 3.3831 -2.0085 -3.7712 12 6 2.0323 -0.7104 1.2305 13 6 1.6986 -2.0339 1.4487 14 6 2.1601 -2.6870 2.5783 15 9 1.8343 -3.9807 2.7912 16 6 2.9564 -2.0135 3.4910 17 17 3.5350 -2.8319 4.9084 18 6 3.2899 -0.6897 3.2722 19 6 2.8282 -0.0374 2.1415 20 9 3.1589 1.2543 1.9246 21 1 -0.3633 0.4623 -0.9178 22 1 -0.3633 -1.0260 0.0585 23 1 -0.3634 0.5636 0.8593 24 1 1.1325 1.4108 -3.4723 25 1 1.0784 -2.5587 0.7373 26 1 3.9108 -0.1646 3.9829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259997631.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = -87.402488 kcal Electronic energy + Delta-G solvation = -15418.952154 eV Core-core repulsion = 12352.002924 eV Total energy + Delta-G solvation = -3066.949230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.69857 -48.44713 -38.75898 -36.53874 -34.44553 -31.66602 -29.93476 -28.44493 -25.25277 -23.58636 -22.33755 -20.18107 -17.48695 -17.21168 -16.85980 -16.07955 -15.58974 -14.95472 -14.81187 -14.35599 -13.81120 -13.76223 -13.01916 -12.73385 -12.63162 -12.21238 -11.92731 -11.39133 -11.36335 -10.96437 -10.92469 -10.69231 -10.41722 -10.34095 -9.67275 -9.25582 -8.62590 -8.48745 -8.03796 -6.17019 -4.21472 1.20193 1.26951 2.06979 3.24286 3.31391 3.33738 3.64807 4.28959 4.33743 4.61307 4.89317 5.17103 5.24207 5.43176 5.69574 6.02040 6.18120 6.39173 6.49967 6.65201 6.78980 6.92371 7.11198 7.50997 7.67917 7.81111 8.15055 8.79933 9.42827 10.91585 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.007001 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.356086 B = 3998.518459 C = 4433.185999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.028 4.028 13 C -0.109 4.109 14 C 0.095 3.905 15 F -0.132 7.132 16 C -0.072 4.072 17 Cl -0.060 7.060 18 C -0.124 4.124 19 C 0.092 3.908 20 F -0.127 7.127 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.017 0.983 24 H 0.264 0.736 25 H 0.155 0.845 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -4.332 10.296 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.074 0.926 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.029 4.029 13 C -0.128 4.128 14 C 0.075 3.925 15 F -0.110 7.110 16 C -0.100 4.100 17 Cl -0.031 7.031 18 C -0.143 4.143 19 C 0.072 3.928 20 F -0.105 7.105 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.173 0.827 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.589 -4.261 10.284 11.245 hybrid contribution 0.323 -0.566 -0.716 0.969 sum 1.912 -4.827 9.568 10.886 Atomic orbital electron populations 1.21764 0.97172 0.99108 1.00501 1.18001 0.93013 0.96773 0.87475 0.92597 1.20984 1.36833 1.08250 0.89604 0.92151 1.24935 0.94904 0.94599 0.99036 1.69961 1.44099 1.13773 1.24152 0.86587 0.78900 0.80093 0.82388 1.20357 1.21178 1.19811 1.20810 0.92591 0.93354 0.96180 1.20974 1.01604 0.94629 0.95630 1.17450 0.99724 0.79481 0.95846 1.91499 1.91010 1.33736 1.94764 1.20376 1.04002 0.93795 0.91794 1.98350 1.87745 1.78762 1.38290 1.20704 1.02548 0.92804 0.98260 1.17410 1.00107 0.79973 0.95314 1.91504 1.90763 1.33688 1.94577 0.90803 0.94751 0.96439 0.92638 0.82723 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.93 37.16 0.33 -2.48 15 2 C 0.07 1.55 2.32 -92.92 -0.22 1.33 15 3 H 0.06 1.46 7.07 -51.93 -0.37 1.09 15 4 C -0.52 -13.35 8.19 -34.44 -0.28 -13.63 15 5 H 0.06 1.54 7.55 -52.49 -0.40 1.14 15 6 C 0.07 1.80 5.17 -17.82 -0.09 1.70 15 7 N -0.88 -24.20 12.16 55.43 0.67 -23.53 15 8 Si 0.89 20.39 29.55 -169.99 -5.02 15.37 15 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 12 C -0.03 -0.57 4.75 -104.55 -0.50 -1.06 15 13 C -0.11 -1.99 8.59 -39.53 -0.34 -2.33 15 14 C 0.10 1.59 7.27 -39.39 -0.29 1.31 15 15 F -0.13 -2.15 16.84 2.25 0.04 -2.11 15 16 C -0.07 -1.13 6.32 -39.45 -0.25 -1.38 15 17 Cl -0.06 -0.82 28.62 -51.86 -1.48 -2.30 15 18 C -0.12 -1.92 9.81 -39.49 -0.39 -2.31 15 19 C 0.09 1.69 7.24 -39.43 -0.29 1.41 15 20 F -0.13 -2.47 16.19 2.25 0.04 -2.43 15 21 H 0.07 1.79 6.84 -51.93 -0.36 1.43 15 22 H 0.03 0.69 7.28 -51.93 -0.38 0.31 15 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 15 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 25 H 0.16 2.75 7.55 -52.49 -0.40 2.35 15 26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -26.04 254.08 -6.11 -32.15 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: -1.87 Total: -3.54 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.30 Total: -17.44 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.67 Total: -23.53 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.04 -6.11 -32.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997631.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.253 kcal (2) G-P(sol) polarization free energy of solvation -26.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds