Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 C 1.50705 * 109.47086 * 239.99987 * 2 1 3 5 5 H 1.07999 * 119.99617 * 245.46539 * 4 2 1 6 6 C 1.37869 * 119.99976 * 65.46353 * 4 2 1 7 7 N 1.31520 * 120.00216 * 9.59285 * 6 4 2 8 8 Si 1.86803 * 120.00066 * 189.59529 * 6 4 2 9 9 H 1.48502 * 109.46881 * 84.99100 * 8 6 4 10 10 H 1.48498 * 109.47012 * 204.99393 * 8 6 4 11 11 H 1.48502 * 109.47072 * 324.99658 * 8 6 4 12 12 C 1.50698 * 109.46973 * 119.99963 * 2 1 3 13 13 C 1.38229 * 119.98957 * 60.02354 * 12 2 1 14 14 C 1.38397 * 120.01291 * 179.97438 * 13 12 2 15 15 F 1.35099 * 120.00416 * 180.02562 * 14 13 12 16 16 C 1.38585 * 119.98567 * 0.02562 * 14 13 12 17 17 Cl 1.73600 * 120.00743 * 179.97438 * 16 14 13 18 18 C 1.38257 * 119.98061 * 359.97438 * 16 14 13 19 19 C 1.38432 * 119.98839 * 239.99875 * 12 2 1 20 20 F 1.35096 * 119.99178 * 359.72833 * 19 12 2 21 21 H 1.09000 * 109.46993 * 63.26409 * 1 2 3 22 22 H 1.09001 * 109.47166 * 183.26320 * 1 2 3 23 23 H 1.08999 * 109.47362 * 303.25858 * 1 2 3 24 24 H 0.96997 * 120.00003 * 180.02562 * 7 6 4 25 25 H 1.07994 * 119.99414 * 0.02562 * 13 12 2 26 26 H 1.08000 * 120.00857 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.3000 1.0359 -2.5935 8 14 2.1751 -1.1785 -4.0101 9 1 1.0224 -2.0607 -4.3236 10 1 2.4221 -0.2621 -5.1522 11 1 3.3831 -2.0085 -3.7712 12 6 2.0323 -0.7104 1.2305 13 6 1.6986 -2.0339 1.4487 14 6 2.1601 -2.6870 2.5783 15 9 1.8343 -3.9807 2.7912 16 6 2.9564 -2.0135 3.4910 17 17 3.5350 -2.8319 4.9084 18 6 3.2899 -0.6897 3.2722 19 6 2.8282 -0.0374 2.1415 20 9 3.1589 1.2543 1.9246 21 1 -0.3633 0.4623 -0.9178 22 1 -0.3633 -1.0260 0.0585 23 1 -0.3634 0.5636 0.8593 24 1 1.1325 1.4108 -3.4723 25 1 1.0784 -2.5587 0.7373 26 1 3.9108 -0.1646 3.9829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997631.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = -99.397831 kcal Electronic energy + Delta-G solvation = -15419.472311 eV Core-core repulsion = 12352.002924 eV Total energy + Delta-G solvation = -3067.469387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.02237 -49.92321 -40.17386 -37.78538 -36.17320 -33.46853 -31.34034 -30.00979 -27.20829 -25.08646 -23.77560 -21.84231 -18.88624 -18.79141 -18.28376 -17.83116 -16.98199 -16.62647 -16.38722 -15.74444 -15.29732 -15.11719 -14.74871 -14.28143 -13.93019 -13.76747 -13.60843 -13.12600 -12.98111 -12.73631 -12.31825 -12.23792 -12.12105 -11.96613 -11.41735 -11.10742 -10.48972 -10.00290 -9.47056 -8.16493 -6.26632 -0.19458 -0.07833 0.82560 1.43380 1.45056 1.53427 2.22784 2.44769 2.95227 3.14679 3.23257 3.56532 3.79797 4.05293 4.35575 4.63808 4.74015 4.78904 4.94755 5.05456 5.09141 5.17147 5.57088 5.62830 5.82528 5.88033 6.21890 6.81130 7.40651 8.91814 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.007001 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.356086 B = 3998.518459 C = 4433.185999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.066 3.934 3 H 0.020 0.980 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.051 4.051 13 C -0.110 4.110 14 C 0.099 3.901 15 F -0.127 7.127 16 C -0.065 4.065 17 Cl -0.034 7.034 18 C -0.104 4.104 19 C 0.078 3.922 20 F -0.138 7.138 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.264 0.736 25 H 0.154 0.846 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -5.744 11.579 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.052 4.052 13 C -0.129 4.129 14 C 0.079 3.921 15 F -0.106 7.106 16 C -0.093 4.093 17 Cl -0.005 7.005 18 C -0.123 4.123 19 C 0.059 3.941 20 F -0.116 7.116 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.218 -5.687 11.581 13.091 hybrid contribution 0.164 -0.171 -0.986 1.014 sum 2.383 -5.858 10.595 12.339 Atomic orbital electron populations 1.21621 0.96411 0.99915 0.99715 1.17788 0.93739 0.95018 0.88739 0.96177 1.21301 1.36358 1.08178 0.90765 0.92288 1.25671 0.95013 0.95396 1.01816 1.70077 1.45446 1.15159 1.24611 0.85660 0.78888 0.78711 0.79001 1.19596 1.21251 1.19402 1.20493 0.94641 0.94236 0.95851 1.20863 1.01808 0.93907 0.96331 1.17369 0.99597 0.79578 0.95546 1.91514 1.90969 1.33409 1.94668 1.20463 1.02835 0.93776 0.92191 1.98370 1.87291 1.78222 1.36597 1.20903 1.01496 0.92584 0.97298 1.17566 1.00581 0.79735 0.96238 1.91476 1.90907 1.34473 1.94778 0.93547 0.93321 0.94875 0.92745 0.82801 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.93 71.98 0.64 -4.66 15 2 C 0.07 3.15 2.32 -12.28 -0.03 3.12 15 3 H 0.02 1.09 7.07 -2.39 -0.02 1.08 15 4 C -0.53 -27.51 8.19 25.60 0.21 -27.30 15 5 H 0.06 3.01 7.55 -2.91 -0.02 2.99 15 6 C 0.02 1.11 5.17 84.65 0.44 1.55 15 7 N -0.91 -51.37 12.16 21.45 0.26 -51.11 15 8 Si 0.95 41.99 29.55 68.60 2.03 44.02 15 9 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 15 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 12 C -0.05 -2.03 4.75 -19.82 -0.09 -2.13 15 13 C -0.11 -3.88 8.59 22.31 0.19 -3.69 15 14 C 0.10 3.10 7.27 22.39 0.16 3.26 15 15 F -0.13 -3.83 16.84 44.97 0.76 -3.07 15 16 C -0.06 -1.83 6.32 22.36 0.14 -1.69 15 17 Cl -0.03 -0.80 28.62 -2.72 -0.08 -0.88 15 18 C -0.10 -2.94 9.81 22.33 0.22 -2.72 15 19 C 0.08 2.82 7.24 22.37 0.16 2.98 15 20 F -0.14 -5.36 16.19 44.97 0.73 -4.63 15 21 H 0.05 2.30 6.84 -2.39 -0.02 2.28 15 22 H 0.05 1.97 7.28 -2.39 -0.02 1.95 15 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 15 25 H 0.15 5.35 7.55 -2.91 -0.02 5.32 15 26 H 0.18 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -55.39 254.08 6.95 -48.44 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.21 Total: -1.51 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 2.04 Total: -31.27 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.26 Total: -51.11 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 1.49 Total: -7.70 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -55.39 6.95 -48.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997631.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.956 kcal (2) G-P(sol) polarization free energy of solvation -55.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds