Wall clock time and date at job start Mon Mar 30 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99591 * 2 1 4 4 C 1.38909 * 120.03105 * 270.28925 * 3 2 1 5 5 F 1.35102 * 120.01181 * 0.02562 * 4 3 2 6 6 C 1.38308 * 119.97719 * 180.25538 * 4 3 2 7 7 C 1.38442 * 120.03041 * 359.45309 * 6 4 3 8 8 F 1.35095 * 119.97720 * 180.25076 * 7 6 4 9 9 C 1.38623 * 120.04896 * 0.27690 * 7 6 4 10 10 F 1.35098 * 119.98019 * 179.97438 * 9 7 6 11 11 C 1.38388 * 120.02643 * 0.02562 * 9 7 6 12 12 C 1.50703 * 120.01106 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47628 * 89.99932 * 12 11 9 14 14 H 1.08009 * 119.99584 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00090 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00290 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99555 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47191 * 90.00141 * 17 15 13 19 19 H 1.48498 * 109.46734 * 209.99633 * 17 15 13 20 20 H 1.48493 * 109.47470 * 329.99978 * 17 15 13 21 21 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47449 * 299.99674 * 1 2 3 23 23 H 1.09001 * 109.46849 * 60.00116 * 1 2 3 24 24 H 1.08002 * 119.98902 * 179.73408 * 6 4 3 25 25 H 1.09000 * 109.46638 * 209.99775 * 12 11 9 26 26 H 1.08998 * 109.47239 * 329.99230 * 12 11 9 27 27 H 0.96992 * 120.00175 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.3565 1.8340 -1.2026 5 9 2.0445 1.2358 -2.3731 6 6 2.9891 3.0640 -1.2013 7 6 3.3030 3.6803 -0.0021 8 9 3.9164 4.8840 -0.0021 9 6 2.9890 3.0631 1.1987 10 9 3.2965 3.6656 2.3681 11 6 2.3617 1.8295 1.2000 12 6 2.0200 1.1591 2.5057 13 6 0.6396 1.5796 2.9403 14 1 0.0672 2.2643 2.3320 15 6 0.1080 1.0910 4.1149 16 7 0.8052 0.2577 4.8558 17 14 -1.6028 1.6129 4.6538 18 1 -2.6062 0.6698 4.0979 19 1 -1.6799 1.6002 6.1367 20 1 -1.8823 2.9835 4.1553 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 3.2342 3.5459 -2.1363 25 1 2.0463 0.0771 2.3762 26 1 2.7450 1.4518 3.2651 27 1 0.4310 -0.0862 5.6819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021853.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:43 Heat of formation + Delta-G solvation = -169.519679 kcal Electronic energy + Delta-G solvation = -17945.745484 eV Core-core repulsion = 14446.899010 eV Total energy + Delta-G solvation = -3498.846474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.56299 -50.08683 -49.62142 -40.86191 -38.09972 -35.51753 -33.10788 -30.68321 -29.45665 -27.56231 -25.75216 -23.70428 -22.88092 -19.37626 -19.30597 -18.92416 -18.60475 -17.64512 -17.52689 -16.79942 -16.59206 -16.57012 -16.11956 -15.91322 -15.77382 -15.37020 -14.69566 -14.45912 -14.38316 -13.69933 -13.40473 -13.20236 -12.75229 -12.65803 -12.55498 -12.32722 -11.74308 -11.61481 -11.03260 -10.62463 -9.88606 -9.62037 -8.23585 -6.36090 -0.45914 -0.24391 1.39842 1.41744 1.51965 1.86493 2.38485 2.45056 2.73855 2.87872 3.09404 3.25812 3.49321 3.81891 4.20327 4.36805 4.44563 4.56794 4.60602 4.77921 4.80222 4.95242 5.25523 5.44246 5.47341 5.66806 6.03828 6.34023 6.72379 7.31331 8.87123 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.009188 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.334937 B = 3046.765708 C = 3839.565671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.336 6.336 3 C 0.072 3.928 4 C 0.107 3.893 5 F -0.118 7.118 6 C -0.143 4.143 7 C 0.097 3.903 8 F -0.120 7.120 9 C 0.051 3.949 10 F -0.132 7.132 11 C -0.063 4.063 12 C 0.063 3.937 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.960 3.040 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.266 1.266 21 H 0.112 0.888 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.201 0.799 25 H 0.025 0.975 26 H 0.009 0.991 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 4.119 -12.466 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.252 6.252 3 C 0.026 3.974 4 C 0.087 3.913 5 F -0.096 7.096 6 C -0.162 4.162 7 C 0.076 3.924 8 F -0.098 7.098 9 C 0.031 3.969 10 F -0.111 7.111 11 C -0.065 4.065 12 C 0.026 3.974 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.191 1.191 21 H 0.130 0.870 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.218 0.782 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.058 3.882 -12.306 12.947 hybrid contribution -0.655 0.356 0.910 1.177 sum 0.403 4.238 -11.396 12.165 Atomic orbital electron populations 1.23304 0.76795 1.04825 1.01616 1.85967 1.22023 1.23195 1.94055 1.18321 1.00640 0.88408 0.89995 1.17501 1.01320 0.92098 0.80428 1.91522 1.90800 1.82970 1.44346 1.20882 1.02154 0.94322 0.98888 1.17115 0.99954 0.83314 0.92008 1.91533 1.80114 1.40993 1.97165 1.17548 1.04776 0.93511 0.81100 1.91486 1.91010 1.82445 1.46159 1.20568 0.95120 0.92614 0.98168 1.17962 0.96729 0.95509 0.87183 1.21104 1.00005 1.27949 1.06960 0.92331 1.25823 1.01850 0.94733 0.96224 1.70065 1.39299 1.32364 1.14622 0.85513 0.79409 0.79130 0.77497 1.18991 1.20867 1.19077 0.87017 0.92933 0.92168 0.78243 0.95692 0.97248 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.13 113.37 1.26 2.19 15 2 O -0.34 -13.07 9.32 -93.54 -0.87 -13.94 15 3 C 0.07 2.71 5.70 22.52 0.13 2.84 15 4 C 0.11 3.22 7.31 22.45 0.16 3.38 15 5 F -0.12 -3.31 17.11 44.97 0.77 -2.54 15 6 C -0.14 -3.64 10.00 22.33 0.22 -3.42 15 7 C 0.10 3.00 7.30 22.41 0.16 3.16 15 8 F -0.12 -3.53 17.18 44.97 0.77 -2.75 15 9 C 0.05 2.01 7.24 22.40 0.16 2.17 15 10 F -0.13 -5.75 16.38 44.97 0.74 -5.01 15 11 C -0.06 -2.70 5.09 -19.74 -0.10 -2.80 15 12 C 0.06 3.28 4.70 29.10 0.14 3.42 15 13 C -0.52 -28.14 7.49 25.60 0.19 -27.94 15 14 H 0.06 3.06 7.67 -2.91 -0.02 3.04 15 15 C 0.01 0.71 5.46 84.66 0.46 1.17 15 16 N -0.92 -53.97 13.29 21.45 0.28 -53.68 15 17 Si 0.96 42.26 29.54 68.60 2.03 44.29 15 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 21 H 0.11 3.15 8.14 -2.38 -0.02 3.13 15 22 H 0.05 2.03 6.37 -2.39 -0.02 2.01 15 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.20 3.31 8.06 -2.91 -0.02 3.29 15 25 H 0.02 1.39 7.53 -2.39 -0.02 1.37 15 26 H 0.01 0.53 7.64 -2.39 -0.02 0.51 15 27 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 Total: -1.00 -60.98 257.43 7.73 -53.25 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 1.21 Total: -3.77 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 2.79 Total: -15.84 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.28 Total: -53.68 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.87 Total: -13.94 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.28 Total: -10.31 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.98 7.73 -53.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021853.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.266 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds