Wall clock time and date at job start Mon Mar 30 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.38353 * 119.98745 * 269.72312 * 11 10 9 13 13 F 1.35106 * 120.01062 * 0.02562 * 12 11 10 14 14 C 1.38866 * 119.97776 * 179.74932 * 12 11 10 15 15 O 1.35999 * 120.02888 * 180.25788 * 14 12 11 16 16 C 1.38647 * 119.94459 * 0.52517 * 14 12 11 17 17 C 1.38359 * 119.96575 * 359.74991 * 16 14 12 18 18 F 1.35103 * 119.98103 * 179.97438 * 17 16 14 19 19 C 1.38396 * 119.98829 * 90.00010 * 11 10 9 20 20 F 1.35110 * 119.96868 * 359.95266 * 19 11 10 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 0.96702 * 113.99428 * 270.27093 * 15 14 12 27 27 H 1.07993 * 120.01447 * 179.77398 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 0.0001 12 6 1.1517 -5.5686 1.1987 13 9 1.4943 -4.9857 2.3684 14 6 0.4528 -6.7686 1.1991 15 8 0.1132 -7.3580 2.3767 16 6 0.1064 -7.3681 -0.0021 17 6 0.4529 -6.7675 -1.1994 18 9 0.1160 -7.3517 -2.3701 19 6 1.1457 -5.5666 -1.1983 20 9 1.4827 -4.9806 -2.3682 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 0.7802 -7.9699 2.7170 27 1 -0.4339 -8.3031 -0.0031 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260024444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:21 Heat of formation + Delta-G solvation = -165.811220 kcal Electronic energy + Delta-G solvation = -17459.646433 eV Core-core repulsion = 13960.960770 eV Total energy + Delta-G solvation = -3498.685663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.39389 -48.77848 -48.43880 -39.46000 -36.94200 -34.02902 -32.10964 -29.26776 -29.06553 -25.50179 -22.81836 -22.72773 -20.68652 -18.53759 -18.14047 -18.02754 -16.82067 -16.50971 -16.20733 -15.64570 -15.30046 -14.86715 -14.60182 -14.48742 -14.46686 -13.78827 -13.47724 -12.97776 -12.56764 -12.38411 -11.76936 -11.59468 -11.19080 -10.93864 -10.84705 -10.64215 -10.00644 -9.82757 -9.22301 -8.61477 -8.47926 -8.38751 -6.03199 -4.07104 0.69475 0.82368 3.04555 3.32801 3.37092 3.39386 3.52620 3.91652 4.06066 4.41754 4.46974 4.53032 4.93040 5.30657 5.32869 5.56466 5.66075 5.78159 5.94480 6.32260 6.37703 6.55732 6.83768 7.33976 7.57331 7.66764 7.93215 8.32075 8.98000 9.57092 11.08071 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.006512 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.422665 B = 4298.749691 C = 4939.583450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.087 4.087 12 C 0.096 3.904 13 F -0.114 7.114 14 C 0.092 3.908 15 O -0.479 6.479 16 C -0.143 4.143 17 C 0.073 3.927 18 F -0.125 7.125 19 C 0.090 3.910 20 F -0.113 7.113 21 H 0.262 0.738 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.393 0.607 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -16.048 1.136 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.118 4.118 11 C -0.089 4.089 12 C 0.076 3.924 13 F -0.092 7.092 14 C 0.046 3.954 15 O -0.289 6.289 16 C -0.163 4.163 17 C 0.053 3.947 18 F -0.104 7.104 19 C 0.069 3.931 20 F -0.091 7.091 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.250 0.750 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.461 -15.569 1.040 15.672 hybrid contribution 0.773 0.719 -0.152 1.067 sum 2.234 -14.850 0.888 15.043 Atomic orbital electron populations 1.69958 1.06103 1.26919 1.50196 1.25014 0.94866 0.99323 0.95074 0.86600 0.79542 0.82869 0.78666 1.20152 1.21233 1.20155 1.21105 0.93040 0.90577 1.51477 0.92423 1.19087 0.93491 0.90189 0.97824 1.20897 0.98815 0.89069 1.03064 1.20317 1.00152 0.98999 0.89470 1.17577 0.99748 0.93257 0.81844 1.91549 1.89825 1.83433 1.44415 1.17959 0.98831 0.92416 0.86203 1.84920 1.46823 1.62385 1.34799 1.20936 1.03803 1.02380 0.89142 1.17320 1.02215 0.92883 0.82303 1.91533 1.90497 1.83258 1.45064 1.17149 1.01566 0.91949 0.82426 1.91569 1.90078 1.83226 1.44254 0.92791 0.96147 0.96119 0.90612 0.90580 0.75029 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.29 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 15 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 9 C 0.03 0.81 4.96 -27.88 -0.14 0.67 15 10 C -0.08 -1.68 4.93 -27.88 -0.14 -1.81 15 11 C -0.09 -1.56 5.14 -104.52 -0.54 -2.10 15 12 C 0.10 1.56 7.25 -39.31 -0.28 1.28 15 13 F -0.11 -2.00 16.31 2.25 0.04 -1.97 15 14 C 0.09 1.22 6.71 -39.20 -0.26 0.96 15 15 O -0.48 -5.38 13.37 -19.74 -0.26 -5.64 15 16 C -0.14 -1.73 9.96 -39.39 -0.39 -2.12 15 17 C 0.07 1.05 7.30 -39.39 -0.29 0.77 15 18 F -0.13 -1.79 17.18 2.25 0.04 -1.75 15 19 C 0.09 1.51 7.24 -39.37 -0.29 1.23 15 20 F -0.11 -2.08 16.38 2.25 0.04 -2.04 15 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.08 1.52 7.64 -51.93 -0.40 1.12 15 25 H 0.08 1.51 7.63 -51.93 -0.40 1.11 15 26 H 0.39 2.22 9.06 45.56 0.41 2.63 15 27 H 0.16 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 260.16 15.07 3.92 3.92 Total: -1.00 -31.62 260.16 -4.44 -36.06 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -1.19 Total: -4.29 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.74 Total: -14.65 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.26 Total: -5.64 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.62 -4.44 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.754 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds