Wall clock time and date at job start Mon Mar 30 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.38353 * 119.98745 * 269.72312 * 11 10 9 13 13 F 1.35106 * 120.01062 * 0.02562 * 12 11 10 14 14 C 1.38866 * 119.97776 * 179.74932 * 12 11 10 15 15 O 1.35999 * 120.02888 * 180.25788 * 14 12 11 16 16 C 1.38647 * 119.94459 * 0.52517 * 14 12 11 17 17 C 1.38359 * 119.96575 * 359.74991 * 16 14 12 18 18 F 1.35103 * 119.98103 * 179.97438 * 17 16 14 19 19 C 1.38396 * 119.98829 * 90.00010 * 11 10 9 20 20 F 1.35110 * 119.96868 * 359.95266 * 19 11 10 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 0.96702 * 113.99428 * 270.27093 * 15 14 12 27 27 H 1.07993 * 120.01447 * 179.77398 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 0.0001 12 6 1.1517 -5.5686 1.1987 13 9 1.4943 -4.9857 2.3684 14 6 0.4528 -6.7686 1.1991 15 8 0.1132 -7.3580 2.3767 16 6 0.1064 -7.3681 -0.0021 17 6 0.4529 -6.7675 -1.1994 18 9 0.1160 -7.3517 -2.3701 19 6 1.1457 -5.5666 -1.1983 20 9 1.4827 -4.9806 -2.3682 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 0.7802 -7.9699 2.7170 27 1 -0.4339 -8.3031 -0.0031 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:21 Heat of formation + Delta-G solvation = -186.768143 kcal Electronic energy + Delta-G solvation = -17460.555193 eV Core-core repulsion = 13960.960770 eV Total energy + Delta-G solvation = -3499.594423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.63076 -50.08582 -49.70494 -40.58044 -38.07652 -35.86101 -33.92331 -30.83613 -30.31246 -27.31903 -24.39839 -23.98094 -22.35163 -19.64881 -19.38778 -19.27534 -18.55493 -17.96694 -17.57476 -16.87716 -16.61404 -16.49255 -16.11448 -15.72669 -15.67935 -15.04858 -14.92489 -14.72985 -14.31546 -13.84242 -13.51383 -13.04653 -12.83115 -12.57140 -12.40825 -12.04892 -11.88555 -11.72150 -11.32081 -10.59653 -9.96674 -9.66409 -8.23359 -6.36182 -0.48225 -0.35899 1.39582 1.43276 1.51134 1.87666 2.38239 2.41163 2.79856 2.87377 3.10051 3.28518 3.32978 3.74194 4.05930 4.32884 4.51138 4.60049 4.66881 4.69724 4.75782 4.96151 5.38431 5.44428 5.54859 5.74863 6.14134 6.62776 6.78557 7.33494 8.88645 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.006512 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.422665 B = 4298.749691 C = 4939.583450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.038 3.962 10 C -0.068 4.068 11 C -0.109 4.109 12 C 0.079 3.921 13 F -0.127 7.127 14 C 0.117 3.883 15 O -0.481 6.481 16 C -0.115 4.115 17 C 0.081 3.919 18 F -0.122 7.122 19 C 0.068 3.932 20 F -0.130 7.130 21 H 0.265 0.735 22 H -0.010 1.010 23 H -0.008 1.008 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.422 0.578 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -17.494 1.642 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.001 3.999 10 C -0.106 4.106 11 C -0.111 4.111 12 C 0.059 3.941 13 F -0.106 7.106 14 C 0.070 3.930 15 O -0.295 6.295 16 C -0.133 4.133 17 C 0.060 3.940 18 F -0.101 7.101 19 C 0.048 3.952 20 F -0.108 7.108 21 H 0.074 0.926 22 H 0.008 0.992 23 H 0.010 0.990 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.283 0.717 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.761 -17.050 1.559 17.211 hybrid contribution 0.624 1.032 -0.257 1.233 sum 2.385 -16.018 1.302 16.247 Atomic orbital electron populations 1.70102 1.07959 1.28047 1.51183 1.26019 0.95779 1.03546 0.94390 0.85433 0.78226 0.77671 0.79328 1.19024 1.20794 1.18921 1.21591 0.93742 0.91809 1.51294 0.91566 1.18880 0.93856 0.92295 0.94859 1.20525 0.97781 0.89015 1.03238 1.20005 1.01828 0.98473 0.90829 1.17845 1.00922 0.94553 0.80822 1.91510 1.90157 1.83955 1.44931 1.17866 0.96601 0.91041 0.87460 1.84866 1.47949 1.62925 1.33802 1.21293 1.01839 1.02919 0.87274 1.17347 1.01506 0.91897 0.83213 1.91546 1.90341 1.82970 1.45195 1.17363 1.03010 0.93240 0.81580 1.91517 1.90478 1.83789 1.45031 0.92629 0.99163 0.99002 0.90551 0.90209 0.71666 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.69 15 2 C 0.00 0.04 5.46 84.65 0.46 0.50 15 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 7 C -0.55 -31.68 9.11 25.60 0.23 -31.45 15 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 15 9 C 0.04 2.09 4.96 29.85 0.15 2.24 15 10 C -0.07 -2.93 4.93 29.85 0.15 -2.78 15 11 C -0.11 -3.96 5.14 -19.80 -0.10 -4.06 15 12 C 0.08 2.51 7.25 22.45 0.16 2.68 15 13 F -0.13 -4.47 16.31 44.97 0.73 -3.73 15 14 C 0.12 2.76 6.71 22.52 0.15 2.91 15 15 O -0.48 -8.92 13.37 -93.54 -1.25 -10.17 15 16 C -0.11 -2.32 9.96 22.40 0.22 -2.10 15 17 C 0.08 2.16 7.30 22.40 0.16 2.32 15 18 F -0.12 -3.22 17.18 44.97 0.77 -2.45 15 19 C 0.07 2.31 7.24 22.41 0.16 2.48 15 20 F -0.13 -4.90 16.38 44.97 0.74 -4.16 15 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 24 H 0.08 3.18 7.64 -2.39 -0.02 3.16 15 25 H 0.08 3.27 7.63 -2.39 -0.02 3.25 15 26 H 0.42 2.88 9.06 -74.06 -0.67 2.21 15 27 H 0.20 2.40 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -70.18 260.16 5.61 -64.57 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: 0.56 Total: -5.85 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 1.75 Total: -27.26 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.25 Total: -10.17 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.24 Total: -10.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.18 5.61 -64.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.196 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds