Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48503 * 109.47048 * 239.99966 * 3 2 1 5 5 H 1.48498 * 109.47620 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46916 * 120.00215 * 3 2 1 7 7 C 1.37874 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47476 * 186.39364 * 9 7 2 11 11 C 1.36142 * 120.17215 * 5.04886 * 10 9 7 12 12 C 1.39323 * 120.98586 * 179.97438 * 11 10 9 13 13 C 1.36137 * 120.98472 * 0.02886 * 12 11 10 14 14 C 1.40499 * 119.65471 * 359.97438 * 13 12 11 15 15 C 1.40553 * 121.29001 * 179.97438 * 14 13 12 16 16 C 1.36098 * 119.68022 * 180.02562 * 15 14 13 17 17 C 1.39356 * 121.00847 * 359.97438 * 16 15 14 18 18 C 1.36205 * 120.98154 * 0.28809 * 17 16 15 19 19 Cl 1.73598 * 120.18959 * 179.70091 * 18 17 16 20 20 C 1.40467 * 120.17497 * 185.07649 * 10 9 7 21 21 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46469 * 66.39108 * 9 7 2 23 23 H 1.09005 * 109.46897 * 306.39327 * 9 7 2 24 24 H 1.07998 * 119.50650 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.51098 * 180.02562 * 12 11 10 26 26 H 1.07999 * 120.16734 * 179.97438 * 13 12 11 27 27 H 1.07998 * 120.15923 * 359.97438 * 15 14 13 28 28 H 1.07996 * 119.49575 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.50771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2227 -3.6402 0.1570 11 6 3.5430 -3.3895 0.3749 12 6 4.4559 -4.4314 0.5236 13 6 4.0543 -5.7304 0.4547 14 6 2.6995 -6.0281 0.2310 15 6 2.2473 -7.3567 0.1533 16 6 0.9276 -7.6076 -0.0651 17 6 0.0136 -6.5661 -0.2128 18 6 0.4155 -5.2663 -0.1488 19 17 -0.7394 -3.9849 -0.3434 20 6 1.7710 -4.9680 0.0794 21 1 -0.4850 0.8400 0.0004 22 1 0.7126 -2.6078 -0.9420 23 1 0.5416 -2.5091 0.8270 24 1 3.8877 -2.3677 0.4342 25 1 5.4978 -4.2053 0.6959 26 1 4.7733 -6.5277 0.5714 27 1 2.9439 -8.1744 0.2654 28 1 0.5835 -8.6296 -0.1247 29 1 -1.0282 -6.7930 -0.3848 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061294.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = 43.569036 kcal Electronic energy + Delta-G solvation = -14945.383530 eV Core-core repulsion = 12438.343181 eV Total energy + Delta-G solvation = -2507.040349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99774 -36.40996 -35.95576 -33.54460 -31.97032 -29.95795 -29.55439 -26.65322 -23.84744 -22.76739 -22.32856 -20.08137 -17.43541 -16.51861 -16.06255 -15.78402 -14.60668 -14.22729 -13.94770 -13.82597 -13.13617 -12.84810 -12.52071 -12.12490 -11.95370 -11.56858 -11.55072 -11.05177 -10.87620 -10.74551 -10.50788 -10.16209 -9.85368 -9.53059 -9.10827 -8.44215 -8.28754 -8.21235 -7.08466 -6.00657 -4.03117 0.92675 1.40918 2.47805 2.71049 3.32532 3.37377 3.39070 3.41554 4.44077 4.56517 5.02188 5.10235 5.26179 5.35427 5.43779 5.52528 5.73153 5.80059 5.96364 6.12908 6.30994 6.51504 6.54072 6.70022 6.72883 7.05550 7.15988 7.23997 7.50236 7.66677 7.77162 7.99795 8.39388 8.99433 9.59985 11.09634 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.008291 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.626161 B = 3376.228597 C = 4367.006545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.033 3.967 10 C -0.021 4.021 11 C -0.136 4.136 12 C -0.095 4.095 13 C -0.152 4.152 14 C -0.038 4.038 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.137 4.137 18 C -0.009 4.009 19 Cl -0.031 7.031 20 C -0.060 4.060 21 H 0.261 0.739 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.144 0.856 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -12.745 0.247 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.083 0.917 9 C -0.003 4.003 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.113 4.113 13 C -0.170 4.170 14 C -0.038 4.038 15 C -0.134 4.134 16 C -0.131 4.131 17 C -0.156 4.156 18 C -0.035 4.035 19 Cl -0.002 7.002 20 C -0.061 4.061 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.162 0.838 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.774 -12.499 0.228 12.805 hybrid contribution 0.375 0.998 0.001 1.067 sum 3.149 -11.501 0.229 11.926 Atomic orbital electron populations 1.69951 1.05953 1.26690 1.50303 1.24966 0.94805 0.99043 0.95165 0.86698 0.79651 0.83309 0.78601 1.20234 1.21320 1.20241 1.21439 0.93159 0.90838 1.51337 0.91749 1.19024 0.93072 0.88861 0.99307 1.20763 0.96432 0.93310 0.91570 1.21288 0.93025 1.00267 1.00768 1.21007 0.99449 0.92982 0.97818 1.20730 0.94035 0.96806 1.05386 1.17946 0.93527 0.92363 0.99989 1.20965 0.95945 0.95330 1.01202 1.20620 0.93193 0.98424 1.00826 1.20655 1.00318 0.90888 1.03743 1.21011 0.90670 0.90187 1.01678 1.98453 1.59104 1.47832 1.94777 1.18008 0.91327 0.94253 1.02500 0.92952 0.92921 0.92701 0.83833 0.86704 0.86387 0.85870 0.85946 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.28 55.43 0.74 -25.21 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.53 -14.48 8.67 -34.44 -0.30 -14.78 15 8 H 0.06 1.67 5.07 -52.48 -0.27 1.41 15 9 C 0.03 0.85 3.28 -29.04 -0.10 0.75 15 10 C -0.02 -0.46 5.86 -104.54 -0.61 -1.07 15 11 C -0.14 -2.77 9.07 -39.93 -0.36 -3.14 15 12 C -0.09 -1.58 9.95 -39.93 -0.40 -1.98 15 13 C -0.15 -2.38 9.77 -39.49 -0.39 -2.77 15 14 C -0.04 -0.65 5.74 -106.84 -0.61 -1.27 15 15 C -0.12 -1.64 9.77 -39.48 -0.39 -2.03 15 16 C -0.11 -1.51 9.95 -39.93 -0.40 -1.91 15 17 C -0.14 -2.11 9.72 -39.90 -0.39 -2.50 15 18 C -0.01 -0.16 6.32 -39.40 -0.25 -0.41 15 19 Cl -0.03 -0.64 23.09 -51.86 -1.20 -1.83 15 20 C -0.06 -1.21 5.74 -106.81 -0.61 -1.82 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.05 1.41 5.99 -51.93 -0.31 1.10 15 23 H 0.06 1.50 6.85 -51.93 -0.36 1.15 15 24 H 0.14 3.01 5.26 -52.49 -0.28 2.74 15 25 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 29 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -29.50 258.29 -8.94 -38.44 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -2.46 Total: -0.20 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -4.89 Total: -31.30 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.74 Total: -25.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.20 Total: -1.83 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.50 -8.94 -38.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061294.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.014 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds