Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48503 * 109.47048 * 239.99966 * 3 2 1 5 5 H 1.48498 * 109.47620 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46916 * 120.00215 * 3 2 1 7 7 C 1.37874 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47476 * 186.39364 * 9 7 2 11 11 C 1.36142 * 120.17215 * 5.04886 * 10 9 7 12 12 C 1.39323 * 120.98586 * 179.97438 * 11 10 9 13 13 C 1.36137 * 120.98472 * 0.02886 * 12 11 10 14 14 C 1.40499 * 119.65471 * 359.97438 * 13 12 11 15 15 C 1.40553 * 121.29001 * 179.97438 * 14 13 12 16 16 C 1.36098 * 119.68022 * 180.02562 * 15 14 13 17 17 C 1.39356 * 121.00847 * 359.97438 * 16 15 14 18 18 C 1.36205 * 120.98154 * 0.28809 * 17 16 15 19 19 Cl 1.73598 * 120.18959 * 179.70091 * 18 17 16 20 20 C 1.40467 * 120.17497 * 185.07649 * 10 9 7 21 21 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46469 * 66.39108 * 9 7 2 23 23 H 1.09005 * 109.46897 * 306.39327 * 9 7 2 24 24 H 1.07998 * 119.50650 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.51098 * 180.02562 * 12 11 10 26 26 H 1.07999 * 120.16734 * 179.97438 * 13 12 11 27 27 H 1.07998 * 120.15923 * 359.97438 * 15 14 13 28 28 H 1.07996 * 119.49575 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.50771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2227 -3.6402 0.1570 11 6 3.5430 -3.3895 0.3749 12 6 4.4559 -4.4314 0.5236 13 6 4.0543 -5.7304 0.4547 14 6 2.6995 -6.0281 0.2310 15 6 2.2473 -7.3567 0.1533 16 6 0.9276 -7.6076 -0.0651 17 6 0.0136 -6.5661 -0.2128 18 6 0.4155 -5.2663 -0.1488 19 17 -0.7394 -3.9849 -0.3434 20 6 1.7710 -4.9680 0.0794 21 1 -0.4850 0.8400 0.0004 22 1 0.7126 -2.6078 -0.9420 23 1 0.5416 -2.5091 0.8270 24 1 3.8877 -2.3677 0.4342 25 1 5.4978 -4.2053 0.6959 26 1 4.7733 -6.5277 0.5714 27 1 2.9439 -8.1744 0.2654 28 1 0.5835 -8.6296 -0.1247 29 1 -1.0282 -6.7930 -0.3848 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061294.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = 28.109682 kcal Electronic energy + Delta-G solvation = -14946.053898 eV Core-core repulsion = 12438.343181 eV Total energy + Delta-G solvation = -2507.710717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32358 -37.77859 -37.37435 -35.32496 -33.66412 -31.26232 -31.04401 -28.36467 -25.62841 -24.05542 -23.77205 -21.54808 -19.03086 -17.94694 -17.59350 -17.20986 -16.42539 -15.63236 -15.38797 -15.30342 -14.51290 -14.25472 -14.19167 -13.71049 -13.63850 -13.01958 -12.93393 -12.71161 -12.67617 -12.17639 -12.05840 -11.76203 -11.58559 -11.25104 -10.62939 -10.41397 -10.11142 -9.52373 -8.49060 -8.13079 -6.22783 -0.36234 0.10855 1.12561 1.34750 1.40027 1.42724 1.49756 2.14312 2.42775 3.17349 3.22784 3.85934 3.92817 4.02302 4.25226 4.34888 4.50047 4.54483 4.67610 4.79500 5.01384 5.22261 5.25527 5.35597 5.45850 5.52974 5.61909 5.66483 5.76537 5.91452 6.02297 6.19875 6.40286 6.89927 7.44179 8.97201 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.008291 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.626161 B = 3376.228597 C = 4367.006545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.050 3.950 10 C -0.069 4.069 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.125 4.125 14 C -0.058 4.058 15 C -0.100 4.100 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.050 4.050 19 Cl -0.066 7.066 20 C -0.080 4.080 21 H 0.260 0.740 22 H 0.028 0.972 23 H 0.021 0.979 24 H 0.125 0.875 25 H 0.149 0.851 26 H 0.167 0.833 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -15.911 0.461 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.091 0.909 9 C 0.013 3.987 10 C -0.070 4.070 11 C -0.160 4.160 12 C -0.125 4.125 13 C -0.142 4.142 14 C -0.059 4.059 15 C -0.117 4.117 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.077 4.077 19 Cl -0.037 7.037 20 C -0.081 4.081 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.039 0.961 24 H 0.143 0.857 25 H 0.167 0.833 26 H 0.184 0.816 27 H 0.188 0.812 28 H 0.187 0.813 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.104 -15.677 0.442 16.493 hybrid contribution -0.319 1.732 -0.059 1.762 sum 4.785 -13.944 0.383 14.747 Atomic orbital electron populations 1.70113 1.07581 1.27361 1.51613 1.25864 0.95659 1.02788 0.94930 0.85608 0.78351 0.78665 0.79053 1.19349 1.21170 1.19228 1.21965 0.93947 0.92061 1.50519 0.90947 1.18615 0.93001 0.90092 0.96960 1.20544 0.96679 0.93658 0.96070 1.21283 0.93112 1.00764 1.00838 1.21246 1.00320 0.92604 0.98375 1.21289 0.94105 0.97478 1.01369 1.18391 0.93889 0.93150 1.00450 1.21484 0.97061 0.94793 0.98392 1.21148 0.92647 0.99790 0.99124 1.21094 1.02071 0.89920 1.00679 1.21202 0.90146 0.90714 1.05611 1.98431 1.60020 1.49958 1.95311 1.18200 0.92574 0.94101 1.03186 0.93125 0.95393 0.96100 0.85703 0.83290 0.81562 0.81245 0.81265 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.28 21.45 0.28 -56.65 15 2 C 0.01 0.32 5.46 84.65 0.46 0.79 15 3 Si 0.96 44.93 29.54 68.60 2.03 46.96 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 7 C -0.55 -31.57 8.67 25.60 0.22 -31.35 15 8 H 0.07 3.94 5.07 -2.91 -0.01 3.93 15 9 C 0.05 2.73 3.28 29.10 0.10 2.83 15 10 C -0.07 -3.25 5.86 -19.81 -0.12 -3.37 15 11 C -0.14 -5.93 9.07 22.04 0.20 -5.73 15 12 C -0.11 -3.36 9.95 22.04 0.22 -3.14 15 13 C -0.12 -3.39 9.77 22.33 0.22 -3.17 15 14 C -0.06 -1.84 5.74 -21.30 -0.12 -1.96 15 15 C -0.10 -2.26 9.77 22.34 0.22 -2.04 15 16 C -0.11 -2.39 9.95 22.04 0.22 -2.17 15 17 C -0.12 -3.42 9.72 22.07 0.21 -3.21 15 18 C -0.05 -1.93 6.32 22.39 0.14 -1.78 15 19 Cl -0.07 -2.91 23.09 -2.72 -0.06 -2.97 15 20 C -0.08 -3.24 5.74 -21.28 -0.12 -3.36 15 21 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15 22 H 0.03 1.64 5.99 -2.39 -0.01 1.63 15 23 H 0.02 1.26 6.85 -2.38 -0.02 1.24 15 24 H 0.13 5.48 5.26 -2.91 -0.02 5.46 15 25 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 26 H 0.17 2.92 8.06 -2.91 -0.02 2.90 15 27 H 0.17 2.34 8.06 -2.91 -0.02 2.32 15 28 H 0.17 2.20 8.06 -2.91 -0.02 2.17 15 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -69.83 258.29 5.27 -64.56 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.17 Total: 5.77 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 1.85 Total: -57.67 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.06 Total: -2.97 kcal Total: -69.83 5.27 -64.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061294.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.673 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds