Wall clock time and date at job start Mon Mar 30 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47039 * 2 1 4 4 C 1.50702 * 109.46798 * 119.99481 * 2 1 3 5 5 H 1.07997 * 119.99876 * 120.00704 * 4 2 1 6 6 C 1.37872 * 120.00375 * 299.99611 * 4 2 1 7 7 N 1.31520 * 119.99794 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00301 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47212 * 120.00226 * 8 6 4 11 11 H 1.48509 * 109.47132 * 240.00416 * 8 6 4 12 12 C 1.50691 * 109.46936 * 239.99550 * 2 1 3 13 13 C 1.38231 * 119.98473 * 299.99408 * 12 2 1 14 14 C 1.38289 * 120.03728 * 179.72453 * 13 12 2 15 15 Cl 1.73602 * 119.99740 * 180.27909 * 14 13 12 16 16 C 1.38594 * 120.00220 * 0.30529 * 14 13 12 17 17 F 1.35099 * 120.01818 * 179.97438 * 16 14 13 18 18 C 1.38375 * 119.96127 * 359.97169 * 16 14 13 19 19 C 1.38444 * 119.96867 * 0.02562 * 18 16 14 20 20 F 1.35099 * 120.00338 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.47331 * 300.00238 * 1 2 3 22 22 H 1.08999 * 109.47376 * 60.00414 * 1 2 3 23 23 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00313 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.98305 * 0.02562 * 13 12 2 26 26 H 1.08003 * 120.01625 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3224 -1.1192 4.0080 9 1 3.1483 -2.2854 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1677 -1.5862 4.8166 12 6 2.0323 -0.7105 -1.2303 13 6 1.6982 -2.0339 -1.4486 14 6 2.1539 -2.6853 -2.5802 15 17 1.7277 -4.3453 -2.8569 16 6 2.9511 -2.0131 -3.4931 17 9 3.3968 -2.6493 -4.5984 18 6 3.2903 -0.6900 -3.2717 19 6 2.8333 -0.0392 -2.1384 20 9 3.1644 1.2525 -1.9214 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1617 3.4843 25 1 1.0770 -2.5581 -0.7374 26 1 3.9112 -0.1651 -3.9827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061334.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:22 Heat of formation + Delta-G solvation = -86.117042 kcal Electronic energy + Delta-G solvation = -15425.303159 eV Core-core repulsion = 12358.409670 eV Total energy + Delta-G solvation = -3066.893489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.80515 -48.51956 -38.77535 -36.36898 -34.46379 -31.56200 -30.21226 -28.19340 -25.26839 -23.43186 -22.47197 -20.11714 -17.93419 -17.19360 -16.35330 -15.83151 -15.69120 -15.24754 -14.93803 -14.41872 -14.16556 -13.75838 -12.97292 -12.65844 -12.42596 -12.14241 -11.81306 -11.42857 -11.19911 -11.02566 -10.86681 -10.66495 -10.37902 -10.25294 -9.73389 -9.18802 -8.63797 -8.49902 -8.01464 -6.13315 -4.21880 1.15668 1.30798 2.19489 3.23214 3.31925 3.35588 3.65044 4.09808 4.33971 4.63495 4.87181 5.18438 5.25040 5.43155 5.77263 6.04587 6.19012 6.34940 6.51051 6.73931 6.84743 7.00093 7.12857 7.54645 7.73949 7.93131 8.19074 8.80036 9.44017 10.92414 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.007761 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.578430 B = 3607.017128 C = 4203.284338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 H 0.048 0.952 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C -0.060 4.060 13 C -0.048 4.048 14 C -0.083 4.083 15 Cl -0.061 7.061 16 C 0.107 3.893 17 F -0.131 7.131 18 C -0.183 4.183 19 C 0.121 3.879 20 F -0.126 7.126 21 H 0.090 0.910 22 H 0.011 0.989 23 H 0.031 0.969 24 H 0.263 0.737 25 H 0.154 0.846 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -4.589 -9.402 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.051 3.949 3 H 0.066 0.934 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 C -0.061 4.061 13 C -0.067 4.067 14 C -0.111 4.111 15 Cl -0.032 7.032 16 C 0.086 3.914 17 F -0.109 7.109 18 C -0.203 4.203 19 C 0.102 3.898 20 F -0.104 7.104 21 H 0.109 0.891 22 H 0.030 0.970 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.447 -4.594 -9.324 10.495 hybrid contribution 0.501 -0.457 0.629 0.925 sum 1.949 -5.051 -8.695 10.242 Atomic orbital electron populations 1.21817 0.96822 0.99641 1.00823 1.17950 0.93439 0.96079 0.87392 0.93431 1.21074 1.31942 1.12713 0.89560 0.92141 1.24941 0.94801 0.94899 0.99039 1.69886 1.36179 1.22629 1.23657 0.86479 0.78739 0.79737 0.82784 1.19626 1.20894 1.20850 1.20887 0.94389 0.93760 0.97064 1.20825 0.98208 0.93516 0.94163 1.21007 1.04278 0.87422 0.98365 1.98352 1.92228 1.16440 1.96203 1.16788 0.99100 0.90475 0.84988 1.91499 1.87617 1.81627 1.50206 1.20830 1.05955 0.93688 0.99851 1.17331 0.98268 0.79649 0.94597 1.91506 1.90594 1.33779 1.94530 0.89105 0.96973 0.94957 0.92749 0.82822 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.78 37.16 0.33 -2.67 15 2 C 0.07 1.64 2.46 -92.92 -0.23 1.41 15 3 H 0.05 1.23 7.12 -51.93 -0.37 0.86 15 4 C -0.51 -13.23 8.24 -34.44 -0.28 -13.52 15 5 H 0.06 1.54 7.60 -52.49 -0.40 1.14 15 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 15 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 C -0.06 -1.20 4.74 -104.55 -0.50 -1.69 15 13 C -0.05 -0.88 8.49 -39.57 -0.34 -1.22 15 14 C -0.08 -1.37 6.33 -39.43 -0.25 -1.62 15 15 Cl -0.06 -0.90 28.62 -51.86 -1.48 -2.39 15 16 C 0.11 1.70 7.27 -39.40 -0.29 1.42 15 17 F -0.13 -2.00 16.84 2.25 0.04 -1.96 15 18 C -0.18 -2.88 10.00 -39.45 -0.39 -3.27 15 19 C 0.12 2.23 7.24 -39.43 -0.29 1.95 15 20 F -0.13 -2.42 16.19 2.25 0.04 -2.38 15 21 H 0.09 2.26 6.07 -51.93 -0.32 1.95 15 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 23 H 0.03 0.67 7.39 -51.93 -0.38 0.29 15 24 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 25 H 0.15 2.76 7.57 -52.49 -0.40 2.36 15 26 H 0.15 1.91 8.06 -52.48 -0.42 1.48 15 LS Contribution 252.95 15.07 3.81 3.81 Total: -1.00 -25.83 252.95 -6.16 -32.00 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -1.85 Total: -3.44 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.33 Total: -17.59 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.63 Total: -23.42 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.83 -6.16 -32.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061334.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.118 kcal (2) G-P(sol) polarization free energy of solvation -25.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds