Wall clock time and date at job start Mon Mar 30 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47039 * 2 1 4 4 C 1.50702 * 109.46798 * 119.99481 * 2 1 3 5 5 H 1.07997 * 119.99876 * 120.00704 * 4 2 1 6 6 C 1.37872 * 120.00375 * 299.99611 * 4 2 1 7 7 N 1.31520 * 119.99794 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00301 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47212 * 120.00226 * 8 6 4 11 11 H 1.48509 * 109.47132 * 240.00416 * 8 6 4 12 12 C 1.50691 * 109.46936 * 239.99550 * 2 1 3 13 13 C 1.38231 * 119.98473 * 299.99408 * 12 2 1 14 14 C 1.38289 * 120.03728 * 179.72453 * 13 12 2 15 15 Cl 1.73602 * 119.99740 * 180.27909 * 14 13 12 16 16 C 1.38594 * 120.00220 * 0.30529 * 14 13 12 17 17 F 1.35099 * 120.01818 * 179.97438 * 16 14 13 18 18 C 1.38375 * 119.96127 * 359.97169 * 16 14 13 19 19 C 1.38444 * 119.96867 * 0.02562 * 18 16 14 20 20 F 1.35099 * 120.00338 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.47331 * 300.00238 * 1 2 3 22 22 H 1.08999 * 109.47376 * 60.00414 * 1 2 3 23 23 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00313 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.98305 * 0.02562 * 13 12 2 26 26 H 1.08003 * 120.01625 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3224 -1.1192 4.0080 9 1 3.1483 -2.2854 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1677 -1.5862 4.8166 12 6 2.0323 -0.7105 -1.2303 13 6 1.6982 -2.0339 -1.4486 14 6 2.1539 -2.6853 -2.5802 15 17 1.7277 -4.3453 -2.8569 16 6 2.9511 -2.0131 -3.4931 17 9 3.3968 -2.6493 -4.5984 18 6 3.2903 -0.6900 -3.2717 19 6 2.8333 -0.0392 -2.1384 20 9 3.1644 1.2525 -1.9214 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1617 3.4843 25 1 1.0770 -2.5581 -0.7374 26 1 3.9112 -0.1651 -3.9827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061334.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:21 Heat of formation + Delta-G solvation = -97.784459 kcal Electronic energy + Delta-G solvation = -15425.809096 eV Core-core repulsion = 12358.409670 eV Total energy + Delta-G solvation = -3067.399426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.07074 -49.98329 -40.19816 -37.65828 -36.22118 -33.36451 -31.59495 -29.78043 -27.23163 -24.91447 -23.91946 -21.79146 -19.29518 -18.75047 -18.02814 -17.33114 -17.06989 -16.84150 -16.34899 -16.09718 -15.52736 -15.11669 -14.75108 -14.07124 -13.97507 -13.69495 -13.44584 -12.97300 -12.91977 -12.83252 -12.31347 -12.15937 -12.11959 -11.98511 -11.46798 -11.05001 -10.49211 -10.00212 -9.46765 -8.11729 -6.26375 -0.22754 -0.05167 0.90389 1.42468 1.45838 1.55942 2.23031 2.45310 2.75330 3.16879 3.28479 3.56258 3.79813 4.06413 4.42788 4.62221 4.75783 4.83788 4.92399 5.08934 5.13622 5.21671 5.57325 5.63273 5.84399 6.02338 6.26219 6.81554 7.42354 8.93257 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.007761 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.578430 B = 3607.017128 C = 4203.284338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.070 3.930 3 H 0.015 0.985 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.278 1.278 12 C -0.082 4.082 13 C -0.049 4.049 14 C -0.081 4.081 15 Cl -0.043 7.043 16 C 0.116 3.884 17 F -0.122 7.122 18 C -0.164 4.164 19 C 0.109 3.891 20 F -0.135 7.135 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.041 0.959 24 H 0.263 0.737 25 H 0.152 0.848 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -5.900 -10.504 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.052 3.948 3 H 0.033 0.967 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.204 1.204 12 C -0.084 4.084 13 C -0.068 4.068 14 C -0.108 4.108 15 Cl -0.014 7.014 16 C 0.096 3.904 17 F -0.100 7.100 18 C -0.183 4.183 19 C 0.090 3.910 20 F -0.114 7.114 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.169 0.831 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.125 -5.916 -10.437 12.184 hybrid contribution 0.304 -0.095 0.874 0.931 sum 2.429 -6.012 -9.563 11.554 Atomic orbital electron populations 1.21664 0.96404 0.99983 1.00170 1.17738 0.93899 0.94505 0.88704 0.96733 1.21368 1.31597 1.12619 0.90694 0.92361 1.25670 0.95094 0.95576 1.01739 1.70010 1.37260 1.23862 1.24147 0.85563 0.78237 0.78715 0.79532 1.19083 1.20961 1.20404 1.20581 0.96386 0.94700 0.96692 1.20692 0.98443 0.92794 0.94834 1.20990 1.03774 0.88300 0.97767 1.98362 1.92070 1.14897 1.96033 1.16785 0.98316 0.90450 0.84837 1.91533 1.87376 1.81448 1.49659 1.21011 1.04912 0.93416 0.98959 1.17438 0.98698 0.79458 0.95418 1.91482 1.90723 1.34441 1.94711 0.91841 0.95418 0.94005 0.92790 0.83077 0.80193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.78 71.98 0.63 -5.04 15 2 C 0.07 3.36 2.46 -12.29 -0.03 3.33 15 3 H 0.01 0.78 7.12 -2.39 -0.02 0.76 15 4 C -0.52 -27.26 8.24 25.60 0.21 -27.05 15 5 H 0.06 2.98 7.60 -2.91 -0.02 2.96 15 6 C 0.02 0.98 5.30 84.65 0.45 1.43 15 7 N -0.91 -50.65 11.32 21.45 0.24 -50.41 15 8 Si 0.95 41.94 29.54 68.60 2.03 43.97 15 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 12 C -0.08 -3.27 4.74 -19.82 -0.09 -3.36 15 13 C -0.05 -1.72 8.49 22.28 0.19 -1.53 15 14 C -0.08 -2.47 6.33 22.37 0.14 -2.33 15 15 Cl -0.04 -1.16 28.62 -2.72 -0.08 -1.23 15 16 C 0.12 3.36 7.27 22.39 0.16 3.52 15 17 F -0.12 -3.28 16.84 44.97 0.76 -2.52 15 18 C -0.16 -4.66 10.00 22.35 0.22 -4.44 15 19 C 0.11 3.91 7.24 22.37 0.16 4.07 15 20 F -0.14 -5.16 16.19 44.97 0.73 -4.43 15 21 H 0.06 3.24 6.07 -2.39 -0.01 3.23 15 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.04 1.76 7.39 -2.39 -0.02 1.74 15 24 H 0.26 13.86 8.31 -92.71 -0.77 13.09 15 25 H 0.15 5.31 7.57 -2.91 -0.02 5.29 15 26 H 0.18 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -54.55 252.95 6.94 -47.61 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: 1.21 Total: -1.58 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 2.05 Total: -31.40 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.24 Total: -50.41 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.49 Total: -6.95 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -54.55 6.94 -47.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061334.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.175 kcal (2) G-P(sol) polarization free energy of solvation -54.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds