Wall clock time and date at job start Mon Mar 30 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86795 * 120.00684 * 2 1 4 4 H 1.48497 * 109.46945 * 270.00369 * 3 2 1 5 5 H 1.48503 * 109.46630 * 29.99861 * 3 2 1 6 6 H 1.48496 * 109.47224 * 150.00095 * 3 2 1 7 7 C 1.39941 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99883 * 197.88286 * 7 2 1 9 9 C 1.41408 * 119.99889 * 17.87840 * 7 2 1 10 10 C 1.40769 * 120.21295 * 24.42790 * 9 7 2 11 11 C 1.37644 * 119.87775 * 180.02562 * 10 9 7 12 12 C 1.38546 * 120.31484 * 359.72473 * 11 10 9 13 13 C 1.39201 * 120.43241 * 0.55606 * 12 11 10 14 14 N 1.40208 * 119.94600 * 179.72232 * 13 12 11 15 15 C 1.37855 * 126.54052 * 129.40854 * 14 13 12 16 16 C 1.34392 * 106.94941 * 180.26598 * 15 14 13 17 17 N 1.34374 * 108.40776 * 0.02562 * 16 15 14 18 18 C 1.31274 * 109.35711 * 359.97438 * 17 16 15 19 19 S 1.76206 * 125.82071 * 179.97438 * 18 17 16 20 20 C 1.38241 * 120.11331 * 359.44258 * 13 12 11 21 21 H 0.97003 * 119.99204 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.06261 * 0.04823 * 10 9 7 23 23 H 1.07996 * 119.83907 * 180.02562 * 11 10 9 24 24 H 1.07992 * 119.78227 * 180.27497 * 12 11 10 25 25 H 1.08002 * 126.52703 * 0.24775 * 15 14 13 26 26 H 1.08001 * 125.79855 * 180.02562 * 16 15 14 27 27 H 1.40994 * 100.00134 * 270.00153 * 19 18 17 28 28 H 1.08009 * 120.15904 * 180.29650 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4399 2.6525 0.7000 6 1 3.5400 1.4399 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0487 -1.2347 0.2866 9 6 1.3520 -2.4068 -0.3770 10 6 0.2212 -2.3606 -1.2141 11 6 -0.4123 -3.5278 -1.5759 12 6 0.0611 -4.7492 -1.1246 13 6 1.1747 -4.8097 -0.2917 14 7 1.6416 -6.0509 0.1637 15 6 2.9385 -6.5139 0.0991 16 6 2.9425 -7.7443 0.6397 17 7 1.6910 -8.0411 1.0286 18 6 0.8980 -7.0329 0.7493 19 16 -0.8324 -6.9610 1.0743 20 6 1.8247 -3.6485 0.0827 21 1 -0.4849 0.8401 0.0004 22 1 -0.1484 -1.4111 -1.5722 23 1 -1.2795 -3.4917 -2.2185 24 1 -0.4399 -5.6600 -1.4174 25 1 3.7892 -5.9882 -0.3085 26 1 3.8051 -8.3857 0.7439 27 1 -1.3303 -7.4997 -0.1298 28 1 2.6917 -3.6949 0.7251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:42 Heat of formation + Delta-G solvation = 71.039159 kcal Electronic energy + Delta-G solvation = -14758.475156 eV Core-core repulsion = 12286.962459 eV Total energy + Delta-G solvation = -2471.512697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.06697 -39.48361 -36.04634 -34.37822 -32.00829 -30.69618 -29.86231 -27.33256 -24.21576 -23.27500 -22.24819 -21.84415 -20.17221 -18.43100 -17.65371 -17.12194 -16.79348 -16.43515 -15.46081 -15.42493 -15.06220 -14.83573 -14.44947 -14.12392 -13.62915 -13.12087 -12.98000 -12.77953 -12.44892 -12.18650 -11.96439 -11.57769 -11.39651 -11.10786 -10.99248 -9.68705 -9.63887 -9.31643 -9.17828 -8.72244 -6.45441 0.08581 0.36744 0.83905 0.92893 1.40335 1.46903 1.53011 1.55639 1.87428 2.03002 2.19439 2.61682 3.53114 3.76198 4.22000 4.32701 4.35686 4.47320 4.84323 4.86079 4.93386 5.09508 5.23217 5.32335 5.57284 5.70835 5.82338 5.94144 5.99526 6.27989 6.54720 6.72622 6.82136 6.85055 8.25050 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.006196 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.051547 B = 4518.043495 C = 4957.422012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.079 0.921 9 C 0.095 3.905 10 C -0.173 4.173 11 C -0.087 4.087 12 C -0.218 4.218 13 C 0.128 3.872 14 N -0.385 5.385 15 C -0.026 4.026 16 C -0.035 4.035 17 N -0.467 5.467 18 C 0.152 3.848 19 S -0.030 6.030 20 C -0.227 4.227 21 H 0.293 0.707 22 H 0.114 0.886 23 H 0.127 0.873 24 H 0.105 0.895 25 H 0.201 0.799 26 H 0.213 0.787 27 H 0.112 0.888 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -5.120 -1.826 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.098 0.902 9 C 0.092 3.908 10 C -0.192 4.192 11 C -0.106 4.106 12 C -0.238 4.238 13 C 0.038 3.962 14 N -0.064 5.064 15 C -0.162 4.162 16 C -0.187 4.187 17 N -0.189 5.189 18 C -0.216 4.216 19 S 0.122 5.878 20 C -0.248 4.248 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.145 0.855 24 H 0.123 0.877 25 H 0.218 0.782 26 H 0.230 0.770 27 H 0.076 0.924 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.531 -5.469 -1.074 5.599 hybrid contribution 1.222 1.021 -1.221 2.007 sum 1.753 -4.449 -2.295 5.304 Atomic orbital electron populations 1.69842 1.08946 1.31078 1.34052 1.26734 0.95488 1.04461 0.91002 0.85176 0.79038 0.75770 0.79653 1.18444 1.19287 1.18335 1.19840 0.98559 0.92114 1.41379 0.90238 1.17732 0.91843 0.91980 0.89224 1.21468 0.99318 0.97591 1.00840 1.20817 0.99018 0.91587 0.99202 1.20290 0.99994 0.97618 1.05936 1.17506 0.97923 0.81674 0.99128 1.43929 1.08733 1.12538 1.41248 1.23682 0.87370 0.98009 1.07141 1.23018 0.95858 0.96090 1.03695 1.70860 1.02865 1.25076 1.20084 1.24581 0.99038 0.89131 1.08820 1.86740 0.90497 1.84109 1.26462 1.20865 1.04976 0.91317 1.07611 0.89648 0.86862 0.85488 0.87738 0.78198 0.77026 0.92373 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.62 10.95 21.83 0.24 -39.38 15 2 C 0.04 1.87 5.14 85.25 0.44 2.31 15 3 Si 0.98 35.57 29.60 68.60 2.03 37.60 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 7 C -0.49 -24.70 9.05 23.46 0.21 -24.49 15 8 H 0.08 3.87 7.91 -2.91 -0.02 3.85 15 9 C 0.10 4.82 5.57 -21.31 -0.12 4.70 15 10 C -0.17 -8.35 8.69 22.75 0.20 -8.15 15 11 C -0.09 -3.70 10.02 22.20 0.22 -3.48 15 12 C -0.22 -9.00 8.87 22.57 0.20 -8.79 15 13 C 0.13 5.50 5.85 38.03 0.22 5.72 15 14 N -0.39 -15.01 2.91 -346.24 -1.01 -16.01 15 15 C -0.03 -0.84 11.32 82.87 0.94 0.10 15 16 C -0.04 -1.06 11.84 83.42 0.99 -0.07 15 17 N -0.47 -17.02 11.29 -196.23 -2.21 -19.23 15 18 C 0.15 5.77 8.08 179.60 1.45 7.22 15 19 S -0.03 -1.02 24.61 -56.49 -1.39 -2.41 15 20 C -0.23 -10.67 9.44 22.84 0.22 -10.45 15 21 H 0.29 12.79 8.30 -92.71 -0.77 12.02 15 22 H 0.11 5.66 6.15 -2.91 -0.02 5.64 15 23 H 0.13 4.57 8.06 -2.91 -0.02 4.55 15 24 H 0.10 3.91 7.57 -2.91 -0.02 3.89 15 25 H 0.20 5.29 8.06 -2.91 -0.02 5.27 15 26 H 0.21 4.46 8.06 -2.91 -0.02 4.44 15 27 H 0.11 3.16 9.55 73.80 0.70 3.87 15 28 H 0.10 4.57 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -56.77 266.26 4.52 -52.25 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.90 Total: 22.57 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.97 Total: -35.38 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.98 Total: -74.63 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.39 Total: -2.41 kcal Total: -56.77 4.52 -52.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.286 kcal (2) G-P(sol) polarization free energy of solvation -56.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds