Wall clock time and date at job start Mon Mar 30 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47327 * 269.99738 * 3 2 1 5 5 H 1.48500 * 109.47252 * 29.99532 * 3 2 1 6 6 H 1.48504 * 109.47179 * 150.00105 * 3 2 1 7 7 C 1.37881 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99668 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00337 * 180.02562 * 7 2 1 10 10 C 1.50692 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.36124 * 120.17506 * 264.99368 * 10 9 7 12 12 C 1.39334 * 120.99258 * 179.97438 * 11 10 9 13 13 C 1.36126 * 120.98516 * 0.02562 * 12 11 10 14 14 C 1.40504 * 119.66325 * 359.97438 * 13 12 11 15 15 C 1.40552 * 121.27828 * 179.97438 * 14 13 12 16 16 C 1.36065 * 119.67155 * 180.02562 * 15 14 13 17 17 C 1.39495 * 120.97814 * 359.97438 * 16 15 14 18 18 Cl 1.73607 * 119.51576 * 179.74236 * 17 16 15 19 19 C 1.36198 * 120.96657 * 0.02562 * 17 16 15 20 20 C 1.40509 * 120.17395 * 84.99694 * 10 9 7 21 21 H 0.97003 * 119.99839 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46983 * 59.99478 * 9 7 2 23 23 H 1.09003 * 109.46818 * 299.99837 * 9 7 2 24 24 H 1.08001 * 119.50322 * 359.97438 * 11 10 9 25 25 H 1.07998 * 119.50654 * 179.97438 * 12 11 10 26 26 H 1.08002 * 120.16613 * 180.02562 * 13 12 11 27 27 H 1.08001 * 120.16946 * 0.04854 * 15 14 13 28 28 H 1.08004 * 119.51349 * 180.02562 * 16 15 14 29 29 H 1.07992 * 120.17732 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 6 4.3382 -3.2260 1.1733 12 6 4.8037 -4.5391 1.1930 13 6 4.9480 -5.2489 0.0404 14 6 4.6232 -4.6517 -1.1892 15 6 4.7598 -5.3530 -2.3996 16 6 4.4362 -4.7426 -3.5719 17 6 3.9691 -3.4283 -3.5920 18 17 3.5737 -2.6843 -5.1099 19 6 3.8242 -2.7184 -2.4388 20 6 4.1498 -3.3158 -1.2092 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6800 0.8910 23 1 3.8752 -0.6805 -0.8889 24 1 4.2332 -2.6849 2.1020 25 1 5.0545 -5.0005 2.1368 26 1 5.3096 -6.2661 0.0711 27 1 5.1195 -6.3713 -2.3994 28 1 4.5417 -5.2840 -4.5004 29 1 3.4611 -1.7018 -2.4692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260069791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:56 Heat of formation + Delta-G solvation = 23.025303 kcal Electronic energy + Delta-G solvation = -14786.333134 eV Core-core repulsion = 12278.401942 eV Total energy + Delta-G solvation = -2507.931192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07262 -36.83740 -35.55379 -33.94875 -32.17259 -29.84646 -29.72267 -27.46480 -23.37697 -22.71989 -22.54962 -19.92801 -17.30921 -16.84207 -16.56177 -16.03426 -14.49180 -14.37298 -13.85467 -13.52106 -13.35868 -13.17180 -12.75740 -12.26772 -12.05902 -11.77961 -11.71343 -11.15907 -10.92373 -10.66653 -10.50821 -10.38324 -10.10452 -9.97352 -9.49163 -9.15731 -8.63772 -8.17072 -7.32436 -6.12861 -4.13309 0.90436 1.28913 2.44893 2.46845 3.24708 3.28498 3.33201 3.34562 4.36006 4.49316 4.90583 5.10179 5.19187 5.28864 5.34688 5.52616 5.66138 5.73083 5.77530 6.08558 6.25823 6.35608 6.47179 6.58011 6.63831 6.79157 6.90737 6.91274 7.10228 7.39839 7.42420 7.60909 8.41960 8.92001 9.46289 10.99766 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.009321 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.120480 B = 3003.112735 C = 4241.073253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.004 4.004 11 C -0.138 4.138 12 C -0.095 4.095 13 C -0.142 4.142 14 C -0.046 4.046 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.052 4.052 18 Cl -0.084 7.084 19 C -0.059 4.059 20 C -0.045 4.045 21 H 0.265 0.735 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.733 -8.425 -3.897 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.026 4.026 10 C -0.004 4.004 11 C -0.156 4.156 12 C -0.113 4.113 13 C -0.160 4.160 14 C -0.046 4.046 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.079 4.079 18 Cl -0.056 7.056 19 C -0.078 4.078 20 C -0.046 4.046 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.528 -8.236 -4.034 13.963 hybrid contribution 0.142 0.917 -0.125 0.936 sum 10.671 -7.319 -4.159 13.592 Atomic orbital electron populations 1.69888 1.06246 1.27072 1.50096 1.24965 0.94706 0.98902 0.94340 0.86877 0.80474 0.83830 0.78843 1.19963 1.21108 1.18860 1.20843 0.87801 0.94765 1.51897 0.90736 1.18888 0.97801 0.88188 0.97737 1.20172 0.91335 0.97764 0.91161 1.20737 1.01588 0.95040 0.98252 1.20837 0.98086 0.94579 0.97830 1.20763 1.03870 0.99632 0.91727 1.18114 0.99155 0.93383 0.93919 1.20833 1.01027 0.99472 0.91166 1.20588 1.00312 0.93178 0.98819 1.20498 1.06089 0.94496 0.86789 1.98341 1.92912 1.82619 1.31688 1.21252 0.95573 1.01116 0.89855 1.17895 1.00140 0.93150 0.93384 0.92480 0.94914 0.95556 0.85972 0.86518 0.86231 0.85343 0.85623 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.18 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 15 3 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 15 7 C -0.52 -14.19 9.65 -34.44 -0.33 -14.52 15 8 H 0.07 2.28 7.98 -52.49 -0.42 1.86 15 9 C 0.01 0.25 3.57 -29.04 -0.10 0.15 15 10 C 0.00 -0.09 5.08 -104.53 -0.53 -0.62 15 11 C -0.14 -2.50 9.57 -39.93 -0.38 -2.88 15 12 C -0.10 -1.45 9.95 -39.93 -0.40 -1.85 15 13 C -0.14 -2.10 9.77 -39.49 -0.39 -2.49 15 14 C -0.05 -0.76 5.74 -106.83 -0.61 -1.38 15 15 C -0.11 -1.51 9.77 -39.49 -0.39 -1.90 15 16 C -0.11 -1.60 9.72 -39.89 -0.39 -1.99 15 17 C -0.05 -0.88 6.28 -39.85 -0.25 -1.13 15 18 Cl -0.08 -1.32 28.91 -51.86 -1.50 -2.82 15 19 C -0.06 -1.15 9.02 -39.45 -0.36 -1.50 15 20 C -0.05 -0.88 5.74 -106.84 -0.61 -1.50 15 21 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 22 H 0.03 0.74 7.10 -51.93 -0.37 0.38 15 23 H 0.03 0.60 6.13 -51.93 -0.32 0.28 15 24 H 0.12 2.08 8.05 -52.49 -0.42 1.66 15 25 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.13 1.39 8.06 -52.49 -0.42 0.96 15 28 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 29 H 0.15 3.05 6.48 -52.49 -0.34 2.71 15 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -29.59 266.69 -8.94 -38.52 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.73 Total: -0.10 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -4.84 Total: -29.64 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.77 Total: -26.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.59 -8.94 -38.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.549 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds