Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.98155 * 2 1 4 4 C 1.38271 * 120.03673 * 180.02562 * 3 2 1 5 5 Cl 1.73607 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.38592 * 120.00516 * 359.69473 * 4 3 2 7 7 F 1.35101 * 120.02580 * 180.30154 * 6 4 3 8 8 C 1.38381 * 119.96288 * 0.57428 * 6 4 3 9 9 C 1.50698 * 120.02274 * 179.72383 * 8 6 4 10 10 C 1.50697 * 109.46993 * 269.72884 * 9 8 6 11 11 H 1.07991 * 120.00449 * 359.72131 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 179.72339 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 359.72191 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.38434 * 119.98332 * 180.02562 * 2 1 3 19 19 F 1.35103 * 120.00113 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.47523 * 269.98402 * 1 2 3 21 21 H 1.09003 * 109.47417 * 29.98206 * 1 2 3 22 22 H 1.08999 * 109.46902 * 149.98293 * 1 2 3 23 23 H 1.08001 * 119.97661 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.47083 * 149.72299 * 9 8 6 25 25 H 1.09001 * 109.46875 * 29.72562 * 9 8 6 26 26 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1974 0.0000 4 6 3.5805 1.1987 -0.0005 5 17 4.4471 2.7030 -0.0012 6 6 4.2747 -0.0008 0.0053 7 9 5.6257 0.0001 0.0110 8 6 3.5834 -1.1995 -0.0003 9 6 4.3369 -2.5045 -0.0002 10 6 4.5881 -2.9396 -1.4210 11 1 4.2333 -2.3342 -2.2419 12 6 5.2664 -4.1133 -1.6729 13 7 5.4809 -4.4958 -2.9127 14 14 5.8808 -5.1602 -0.2529 15 1 4.8320 -6.1392 0.1302 16 1 7.1079 -5.8861 -0.6679 17 1 6.1908 -4.2873 0.9078 18 6 2.1988 -1.1991 -0.0005 19 9 1.5230 -2.3689 -0.0005 20 1 -0.3634 -0.0003 1.0277 21 1 -0.3634 0.8901 -0.5136 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6571 2.1323 -0.0004 24 1 3.7479 -3.2642 0.5137 25 1 5.2893 -2.3741 0.5136 26 1 5.9585 -5.3213 -3.0899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -85.900749 kcal Electronic energy + Delta-G solvation = -15498.627335 eV Core-core repulsion = 12431.743225 eV Total energy + Delta-G solvation = -3066.884110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.51412 -48.47308 -38.86838 -36.42557 -33.98438 -32.24358 -30.99999 -28.00175 -26.56398 -23.55586 -21.88366 -20.45377 -17.76101 -17.28718 -16.97744 -15.79761 -15.57879 -15.00855 -14.84856 -14.29405 -14.05615 -13.39057 -13.29615 -13.01196 -12.46041 -12.43022 -12.22247 -12.10444 -11.62505 -11.46287 -11.03120 -10.81129 -10.58953 -10.27861 -10.08926 -9.51073 -8.64309 -8.25929 -8.21131 -6.13696 -4.14702 1.08082 1.27195 2.13299 3.26270 3.33668 3.36066 3.50644 4.22433 4.36591 4.60580 4.73836 4.92994 5.16976 5.19428 5.52897 5.59748 5.82131 5.85607 6.00103 6.10879 6.25185 6.33695 6.78510 7.00046 7.04757 7.54649 8.37225 8.87166 9.44700 10.98930 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.008683 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.552127 B = 3224.099578 C = 4037.587966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.082 4.082 5 Cl -0.059 7.059 6 C 0.131 3.869 7 F -0.115 7.115 8 C -0.087 4.087 9 C 0.017 3.983 10 C -0.517 4.517 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.130 3.870 19 F -0.120 7.120 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.145 0.855 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 11.106 7.668 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.109 4.109 5 Cl -0.030 7.030 6 C 0.111 3.889 7 F -0.093 7.093 8 C -0.089 4.089 9 C -0.020 4.020 10 C -0.555 4.555 11 H 0.092 0.908 12 C -0.127 4.127 13 N -0.532 5.532 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.110 3.890 19 F -0.099 7.099 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.162 0.838 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.364 11.044 7.547 15.269 hybrid contribution 0.662 -0.692 0.504 1.081 sum -6.702 10.352 8.050 14.728 Atomic orbital electron populations 1.20674 0.89500 1.03533 1.02717 1.19795 0.97247 0.91078 1.04462 1.20408 0.90602 0.98084 1.00839 1.20874 0.92995 0.86173 1.10900 1.98353 1.76788 1.30761 1.97131 1.16862 0.77870 0.91385 1.02789 1.91540 1.27433 1.97039 1.93292 1.20345 0.92677 0.97078 0.98796 1.18750 0.95292 0.88055 0.99885 1.20758 1.37415 1.07771 0.89569 0.90762 1.24922 0.95092 0.97076 0.95632 1.69881 1.41163 1.23443 1.18718 0.86827 0.78879 0.80891 0.83159 1.19900 1.20939 1.18834 1.17065 0.88750 0.81207 1.01944 1.91503 1.79375 1.45684 1.93300 0.90826 0.90949 0.90798 0.83773 0.94601 0.94201 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.83 36.01 0.35 -0.83 15 2 C -0.12 -1.84 5.89 -104.55 -0.62 -2.45 15 3 C -0.08 -1.11 9.48 -39.57 -0.38 -1.49 15 4 C -0.08 -1.32 6.32 -39.44 -0.25 -1.57 15 5 Cl -0.06 -0.85 28.62 -51.86 -1.48 -2.33 15 6 C 0.13 2.57 7.22 -39.40 -0.28 2.29 15 7 F -0.11 -2.40 16.04 2.25 0.04 -2.36 15 8 C -0.09 -1.83 5.08 -104.49 -0.53 -2.36 15 9 C 0.02 0.42 3.82 -29.04 -0.11 0.31 15 10 C -0.52 -14.80 9.65 -34.44 -0.33 -15.13 15 11 H 0.07 2.31 7.98 -52.49 -0.42 1.90 15 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 13 N -0.89 -27.39 13.96 55.43 0.77 -26.62 15 14 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 15 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 17 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 18 C 0.13 2.43 7.18 -39.43 -0.28 2.14 15 19 F -0.12 -2.35 15.68 2.25 0.04 -2.31 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.64 8.09 -51.93 -0.42 0.22 15 22 H 0.07 0.85 7.64 -51.93 -0.40 0.46 15 23 H 0.14 1.50 8.06 -52.49 -0.42 1.07 15 24 H 0.04 0.85 7.08 -51.93 -0.37 0.48 15 25 H 0.04 0.97 6.68 -51.93 -0.35 0.62 15 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 254.43 15.07 3.83 3.83 Total: -1.00 -30.21 254.43 -5.96 -36.17 By element: Atomic # 1 Polarization: -4.18 SS G_CDS: -1.96 Total: -6.14 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.52 Total: -17.01 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.21 -5.96 -36.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.726 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds