Wall clock time and date at job start Mon Mar 30 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48497 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46882 * 299.99965 * 3 2 1 6 6 H 1.48502 * 109.47421 * 59.99497 * 3 2 1 7 7 C 1.37886 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00385 * 171.36073 * 7 2 1 9 9 C 1.50695 * 119.99576 * 351.36438 * 7 2 1 10 10 C 1.50694 * 115.55521 * 83.45352 * 9 7 2 11 11 C 1.38924 * 119.92630 * 236.15214 * 10 9 7 12 12 C 1.36210 * 121.23567 * 179.75001 * 11 10 9 13 13 C 1.40752 * 120.05687 * 0.52459 * 12 11 10 14 14 N 1.33815 * 132.05707 * 179.72100 * 13 12 11 15 15 N 1.27166 * 120.01040 * 180.02562 * 14 13 12 16 16 S 1.56639 * 110.53544 * 359.97438 * 15 14 13 17 17 C 1.40945 * 117.84197 * 359.73782 * 13 12 11 18 18 C 1.36887 * 119.92194 * 56.42330 * 10 9 7 19 19 C 1.53010 * 117.49558 * 229.12602 * 9 7 2 20 20 C 1.53002 * 117.49842 * 297.77981 * 9 7 2 21 21 H 0.97001 * 120.00147 * 354.98168 * 1 2 3 22 22 H 1.07993 * 119.37988 * 0.02562 * 11 10 9 23 23 H 1.08000 * 119.96961 * 180.23499 * 12 11 10 24 24 H 1.08003 * 120.22748 * 0.02562 * 18 10 9 25 25 H 1.09004 * 117.49403 * 215.00302 * 19 9 7 26 26 H 1.08996 * 117.49579 * 0.02562 * 19 9 7 27 27 H 1.09007 * 117.49817 * 359.97438 * 20 9 7 28 28 H 1.09003 * 117.49825 * 144.97330 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0753 -1.1995 -0.1399 9 6 1.2638 -2.4916 0.1971 10 6 0.6352 -3.0754 -1.0418 11 6 -0.7261 -3.3515 -1.0640 12 6 -1.3228 -3.8746 -2.1711 13 6 -0.5572 -4.1561 -3.3181 14 7 -0.8843 -4.6657 -4.5114 15 7 0.0100 -4.8267 -5.4011 16 16 1.4062 -4.3579 -4.8678 17 6 0.8230 -3.8739 -3.2738 18 6 1.4079 -3.3376 -2.1409 19 6 1.8149 -3.4691 1.2374 20 6 0.5280 -2.6911 1.5237 21 1 -0.4850 0.8368 0.0735 22 1 -1.3233 -3.1435 -0.1886 23 1 -2.3835 -4.0778 -2.1672 24 1 2.4673 -3.1279 -2.1234 25 1 1.7227 -4.5343 1.0255 26 1 2.7128 -3.1733 1.7798 27 1 0.5801 -1.8840 2.2544 28 1 -0.4110 -3.2442 1.5001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:52 Heat of formation + Delta-G solvation = 105.863472 kcal Electronic energy + Delta-G solvation = -14989.962340 eV Core-core repulsion = 12519.959738 eV Total energy + Delta-G solvation = -2470.002602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52109 -38.15468 -35.62222 -32.17090 -30.80378 -30.16321 -26.34267 -25.49226 -22.89199 -22.33399 -21.07161 -19.71643 -18.72825 -16.88144 -15.75613 -15.27707 -15.13404 -14.90201 -14.62625 -13.51918 -13.46742 -12.81997 -12.32317 -11.95024 -11.88222 -11.58018 -11.24460 -11.07744 -10.62400 -10.54605 -10.39522 -10.00829 -9.90127 -9.67157 -9.40798 -8.66644 -8.64123 -8.29765 -7.55717 -6.25789 -4.33086 0.43460 1.44383 1.61675 2.08940 2.53399 3.17421 3.27542 3.29815 4.10045 4.22138 4.25545 4.90771 5.00610 5.13603 5.50170 5.69663 5.81845 5.92422 6.12576 6.19168 6.31255 6.44281 6.51477 6.57288 6.84462 7.01730 7.17449 7.25011 7.39697 7.67093 8.10897 8.12920 8.68540 9.33960 10.82381 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.007606 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.428880 B = 3680.606627 C = 4052.029140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.060 3.940 10 C 0.055 3.945 11 C -0.085 4.085 12 C -0.048 4.048 13 C 0.003 3.997 14 N -0.215 5.215 15 N -0.260 5.260 16 S 0.282 5.718 17 C -0.184 4.184 18 C -0.072 4.072 19 C -0.194 4.194 20 C -0.156 4.156 21 H 0.263 0.737 22 H 0.139 0.861 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -5.905 -1.562 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.059 3.941 10 C 0.047 3.953 11 C -0.106 4.106 12 C -0.074 4.074 13 C -0.126 4.126 14 N -0.094 5.094 15 N -0.240 5.240 16 S 0.421 5.579 17 C -0.311 4.311 18 C -0.096 4.096 19 C -0.231 4.231 20 C -0.194 4.194 21 H 0.073 0.927 22 H 0.157 0.843 23 H 0.151 0.849 24 H 0.154 0.846 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.252 -6.476 -3.629 7.528 hybrid contribution -0.110 1.559 1.317 2.044 sum 1.142 -4.916 -2.312 5.552 Atomic orbital electron populations 1.70010 1.05924 1.27266 1.46949 1.24989 0.94846 0.99159 0.93967 0.86560 0.80384 0.83520 0.77809 1.19465 1.20925 1.20714 1.20406 0.93230 0.88011 1.51692 0.91544 1.17757 0.98307 0.94043 0.83988 1.19908 0.92316 0.87173 0.95902 1.20929 0.95428 0.96254 0.97988 1.20170 0.99186 0.98714 0.89328 1.20368 0.92190 1.05881 0.94206 1.70960 1.25345 1.13877 0.99179 1.78563 1.00100 1.21238 1.24104 1.82169 1.18892 1.53821 1.03049 1.25014 0.97014 1.07972 1.01096 1.19653 1.00870 0.99276 0.89761 1.23061 0.98372 0.95623 1.06066 1.22687 0.93174 1.01325 1.02177 0.92707 0.84312 0.84902 0.84637 0.91225 0.89645 0.89558 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.40 13.07 55.43 0.72 -21.68 15 2 C 0.08 1.89 5.39 -17.82 -0.10 1.80 15 3 Si 0.89 19.63 29.55 -169.99 -5.02 14.61 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 7 C -0.50 -12.09 8.57 -34.44 -0.30 -12.39 15 8 H 0.07 1.62 7.83 -52.49 -0.41 1.21 15 9 C 0.06 1.29 1.55 -156.81 -0.24 1.05 15 10 C 0.06 1.13 5.20 -104.86 -0.55 0.58 15 11 C -0.09 -1.61 9.18 -40.06 -0.37 -1.98 15 12 C -0.05 -0.86 10.06 -39.36 -0.40 -1.25 15 13 C 0.00 0.05 7.17 -85.03 -0.61 -0.56 15 14 N -0.22 -4.18 11.66 32.11 0.37 -3.81 15 15 N -0.26 -4.78 12.45 60.35 0.75 -4.03 15 16 S 0.28 4.59 23.61 -107.50 -2.54 2.05 15 17 C -0.18 -3.45 6.79 -38.53 -0.26 -3.71 15 18 C -0.07 -1.41 9.44 -40.04 -0.38 -1.79 15 19 C -0.19 -3.66 9.94 -26.69 -0.27 -3.92 15 20 C -0.16 -3.15 9.13 -26.69 -0.24 -3.39 15 21 H 0.26 6.57 8.32 -40.82 -0.34 6.23 15 22 H 0.14 2.48 6.47 -52.49 -0.34 2.14 15 23 H 0.13 1.97 8.06 -52.49 -0.42 1.54 15 24 H 0.14 2.50 8.06 -52.48 -0.42 2.08 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.09 1.58 8.14 -51.93 -0.42 1.15 15 27 H 0.09 1.86 8.14 -51.93 -0.42 1.43 15 28 H 0.07 1.29 6.63 -51.93 -0.34 0.94 15 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -26.38 263.88 -7.78 -34.16 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.34 Total: 0.27 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -3.70 Total: -25.56 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 1.85 Total: -29.52 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -2.54 Total: 2.05 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.38 -7.78 -34.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.025 kcal (2) G-P(sol) polarization free energy of solvation -26.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds