Wall clock time and date at job start Mon Mar 30 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48497 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46882 * 299.99965 * 3 2 1 6 6 H 1.48502 * 109.47421 * 59.99497 * 3 2 1 7 7 C 1.37886 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00385 * 171.36073 * 7 2 1 9 9 C 1.50695 * 119.99576 * 351.36438 * 7 2 1 10 10 C 1.50694 * 115.55521 * 83.45352 * 9 7 2 11 11 C 1.38924 * 119.92630 * 236.15214 * 10 9 7 12 12 C 1.36210 * 121.23567 * 179.75001 * 11 10 9 13 13 C 1.40752 * 120.05687 * 0.52459 * 12 11 10 14 14 N 1.33815 * 132.05707 * 179.72100 * 13 12 11 15 15 N 1.27166 * 120.01040 * 180.02562 * 14 13 12 16 16 S 1.56639 * 110.53544 * 359.97438 * 15 14 13 17 17 C 1.40945 * 117.84197 * 359.73782 * 13 12 11 18 18 C 1.36887 * 119.92194 * 56.42330 * 10 9 7 19 19 C 1.53010 * 117.49558 * 229.12602 * 9 7 2 20 20 C 1.53002 * 117.49842 * 297.77981 * 9 7 2 21 21 H 0.97001 * 120.00147 * 354.98168 * 1 2 3 22 22 H 1.07993 * 119.37988 * 0.02562 * 11 10 9 23 23 H 1.08000 * 119.96961 * 180.23499 * 12 11 10 24 24 H 1.08003 * 120.22748 * 0.02562 * 18 10 9 25 25 H 1.09004 * 117.49403 * 215.00302 * 19 9 7 26 26 H 1.08996 * 117.49579 * 0.02562 * 19 9 7 27 27 H 1.09007 * 117.49817 * 359.97438 * 20 9 7 28 28 H 1.09003 * 117.49825 * 144.97330 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0753 -1.1995 -0.1399 9 6 1.2638 -2.4916 0.1971 10 6 0.6352 -3.0754 -1.0418 11 6 -0.7261 -3.3515 -1.0640 12 6 -1.3228 -3.8746 -2.1711 13 6 -0.5572 -4.1561 -3.3181 14 7 -0.8843 -4.6657 -4.5114 15 7 0.0100 -4.8267 -5.4011 16 16 1.4062 -4.3579 -4.8678 17 6 0.8230 -3.8739 -3.2738 18 6 1.4079 -3.3376 -2.1409 19 6 1.8149 -3.4691 1.2374 20 6 0.5280 -2.6911 1.5237 21 1 -0.4850 0.8368 0.0735 22 1 -1.3233 -3.1435 -0.1886 23 1 -2.3835 -4.0778 -2.1672 24 1 2.4673 -3.1279 -2.1234 25 1 1.7227 -4.5343 1.0255 26 1 2.7128 -3.1733 1.7798 27 1 0.5801 -1.8840 2.2544 28 1 -0.4110 -3.2442 1.5001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:51 Heat of formation + Delta-G solvation = 92.740976 kcal Electronic energy + Delta-G solvation = -14990.531374 eV Core-core repulsion = 12519.959738 eV Total energy + Delta-G solvation = -2470.571636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.95968 -39.66004 -37.15754 -34.01203 -32.23705 -31.62130 -27.96518 -27.16459 -24.33423 -23.84738 -22.60156 -21.32941 -20.14054 -18.57750 -17.25609 -16.73279 -16.62825 -16.56599 -16.26135 -15.09020 -14.89806 -14.33923 -13.85846 -13.43805 -13.34544 -13.19956 -13.02753 -12.82856 -12.34246 -12.00973 -11.91805 -11.53287 -11.42053 -11.09157 -11.03302 -10.47845 -10.26018 -9.79555 -8.99370 -8.12523 -6.23083 -1.00248 0.04469 0.17163 0.69004 1.06583 1.41415 1.47404 1.54880 2.42957 2.64526 2.79359 3.17642 3.46502 3.55940 4.00074 4.29413 4.36659 4.45857 4.62108 4.69233 4.81672 4.99325 5.02685 5.10027 5.28683 5.52206 5.64038 5.70165 5.81118 5.87395 6.36149 6.67883 6.81978 7.45588 8.94623 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.007606 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.428880 B = 3680.606627 C = 4052.029140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.036 3.964 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.037 3.963 11 C -0.090 4.090 12 C -0.044 4.044 13 C -0.006 4.006 14 N -0.235 5.235 15 N -0.275 5.275 16 S 0.357 5.643 17 C -0.205 4.205 18 C -0.079 4.079 19 C -0.173 4.173 20 C -0.157 4.157 21 H 0.260 0.740 22 H 0.144 0.856 23 H 0.161 0.839 24 H 0.139 0.861 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -6.615 -2.062 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.034 3.966 10 C 0.029 3.971 11 C -0.111 4.111 12 C -0.069 4.069 13 C -0.136 4.136 14 N -0.113 5.113 15 N -0.255 5.255 16 S 0.496 5.504 17 C -0.333 4.333 18 C -0.102 4.102 19 C -0.211 4.211 20 C -0.194 4.194 21 H 0.070 0.930 22 H 0.162 0.838 23 H 0.178 0.822 24 H 0.156 0.844 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.610 -7.191 -4.122 8.444 hybrid contribution -0.133 1.714 1.385 2.208 sum 1.478 -5.477 -2.736 6.298 Atomic orbital electron populations 1.70086 1.06749 1.27450 1.48527 1.25536 0.95442 1.01434 0.94221 0.85801 0.79617 0.80751 0.77280 1.19023 1.21597 1.20647 1.20654 0.93157 0.89551 1.50853 0.92307 1.17791 0.99569 0.94125 0.85110 1.19862 0.93131 0.88459 0.95624 1.20987 0.94913 0.96497 0.98665 1.20426 1.00473 0.97574 0.88410 1.20650 0.92615 1.05735 0.94560 1.71022 1.25834 1.15071 0.99335 1.78347 1.01307 1.21313 1.24543 1.81900 1.16582 1.51408 1.00545 1.25234 0.97504 1.08271 1.02290 1.19678 1.01041 0.99516 0.89925 1.23076 0.97673 0.96317 1.04005 1.22626 0.94638 1.01263 1.00861 0.93046 0.83793 0.82163 0.84358 0.89059 0.89492 0.91597 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.30 13.07 21.45 0.28 -46.02 15 2 C 0.04 1.80 5.39 84.66 0.46 2.26 15 3 Si 0.94 40.35 29.55 68.60 2.03 42.38 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.29 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 7 C -0.50 -24.54 8.57 25.60 0.22 -24.32 15 8 H 0.06 2.86 7.83 -2.91 -0.02 2.84 15 9 C 0.03 1.48 1.55 -53.67 -0.08 1.40 15 10 C 0.04 1.49 5.20 -20.02 -0.10 1.39 15 11 C -0.09 -3.28 9.18 21.96 0.20 -3.08 15 12 C -0.04 -1.47 10.06 22.41 0.23 -1.25 15 13 C -0.01 -0.24 7.17 40.12 0.29 0.05 15 14 N -0.23 -8.71 11.66 -52.33 -0.61 -9.32 15 15 N -0.27 -9.54 12.45 37.02 0.46 -9.08 15 16 S 0.36 10.78 23.61 -56.49 -1.33 9.45 15 17 C -0.21 -7.39 6.79 22.95 0.16 -7.23 15 18 C -0.08 -2.98 9.44 21.97 0.21 -2.77 15 19 C -0.17 -6.30 9.94 30.62 0.30 -6.00 15 20 C -0.16 -6.20 9.13 30.62 0.28 -5.92 15 21 H 0.26 13.10 8.32 -92.71 -0.77 12.33 15 22 H 0.14 5.00 6.47 -2.91 -0.02 4.98 15 23 H 0.16 4.38 8.06 -2.91 -0.02 4.36 15 24 H 0.14 5.01 8.06 -2.91 -0.02 4.98 15 25 H 0.09 2.91 8.14 -2.38 -0.02 2.89 15 26 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 27 H 0.07 2.85 8.14 -2.38 -0.02 2.83 15 28 H 0.09 3.09 6.63 -2.39 -0.02 3.07 15 Total: -1.00 -54.43 263.88 4.16 -50.26 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.19 Total: 7.80 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 2.15 Total: -45.48 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 0.13 Total: -64.42 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 10.78 SS G_CDS: -1.33 Total: 9.45 kcal Total: -54.43 4.16 -50.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.005 kcal (2) G-P(sol) polarization free energy of solvation -54.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds