Wall clock time and date at job start Mon Mar 30 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86808 * 119.99756 * 2 1 4 4 H 1.48494 * 109.46671 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46874 * 299.99940 * 3 2 1 6 6 H 1.48499 * 109.46916 * 60.00107 * 3 2 1 7 7 C 1.37869 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00181 * 173.87847 * 7 2 1 9 9 C 1.50701 * 120.00100 * 353.88082 * 7 2 1 10 10 C 1.50700 * 115.55180 * 82.65745 * 9 7 2 11 11 C 1.38922 * 119.37858 * 233.50647 * 10 9 7 12 12 C 1.36896 * 120.14683 * 180.25349 * 11 10 9 13 13 C 1.38306 * 119.54862 * 359.47946 * 12 11 10 14 14 S 1.76499 * 134.93442 * 180.14660 * 13 12 11 15 15 N 1.56640 * 95.45027 * 180.33463 * 14 13 12 16 16 N 1.27162 * 110.53780 * 0.02562 * 15 14 13 17 17 C 1.33822 * 120.00891 * 359.97438 * 16 15 14 18 18 C 1.36206 * 119.37875 * 53.48989 * 10 9 7 19 19 C 1.53004 * 117.49535 * 228.33326 * 9 7 2 20 20 C 1.53007 * 117.49418 * 296.98673 * 9 7 2 21 21 H 0.97000 * 119.99782 * 354.98591 * 1 2 3 22 22 H 1.07998 * 119.92651 * 359.97438 * 11 10 9 23 23 H 1.08001 * 120.22162 * 179.72931 * 12 11 10 24 24 H 1.07998 * 119.97363 * 0.02562 * 18 10 9 25 25 H 1.09007 * 117.49490 * 215.00345 * 19 9 7 26 26 H 1.08997 * 117.50343 * 0.02562 * 19 9 7 27 27 H 1.08999 * 117.50232 * 359.97438 * 20 9 7 28 28 H 1.08999 * 117.49321 * 144.97496 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0800 -1.1967 -0.0992 9 6 1.2576 -2.4953 0.1402 10 6 0.6608 -3.0420 -1.1310 11 6 -0.6904 -3.3628 -1.1667 12 6 -1.2477 -3.8653 -2.3117 13 6 -0.4589 -4.0407 -3.4341 14 16 -0.7374 -4.6333 -5.0732 15 7 0.7428 -4.4488 -5.5515 16 7 1.4605 -3.9818 -4.6114 17 6 0.9138 -3.7218 -3.4179 18 6 1.4563 -3.2119 -2.2235 19 6 1.7802 -3.5032 1.1659 20 6 0.4872 -2.7315 1.4410 21 1 -0.4850 0.8369 0.0734 22 1 -1.3015 -3.2196 -0.2879 23 1 -2.2971 -4.1192 -2.3394 24 1 2.5043 -2.9558 -2.1729 25 1 1.6924 -4.5618 0.9211 26 1 2.6640 -3.2250 1.7399 27 1 0.5210 -1.9458 2.1957 28 1 -0.4514 -3.2819 1.3770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:49 Heat of formation + Delta-G solvation = 93.281336 kcal Electronic energy + Delta-G solvation = -15008.051348 eV Core-core repulsion = 12537.503144 eV Total energy + Delta-G solvation = -2470.548204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97297 -39.65193 -37.19074 -34.00752 -32.25246 -31.51958 -27.80155 -27.30622 -24.48536 -23.84495 -22.62331 -21.39601 -19.69281 -18.44317 -17.69927 -16.74146 -16.66550 -16.58771 -16.18353 -15.07859 -14.89562 -14.34546 -13.87672 -13.46989 -13.33880 -13.05614 -12.90929 -12.79256 -12.44858 -12.14641 -11.92917 -11.46523 -11.42302 -11.07165 -11.00599 -10.48323 -10.27911 -9.67766 -9.04388 -8.12257 -6.22842 -1.02868 0.05612 0.20853 0.67469 1.05714 1.39572 1.45211 1.53118 2.42463 2.64219 2.79440 3.17980 3.47802 3.56931 4.07430 4.23088 4.34749 4.50337 4.62049 4.71377 4.85141 5.00528 5.01525 5.09085 5.28939 5.51946 5.65238 5.70176 5.82432 5.92188 6.37602 6.70051 6.81765 7.45932 8.95124 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.007445 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.787262 B = 3759.869474 C = 4143.493214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.037 3.963 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.053 0.947 9 C 0.035 3.965 10 C 0.009 3.991 11 C -0.066 4.066 12 C -0.067 4.067 13 C -0.229 4.229 14 S 0.382 5.618 15 N -0.273 5.273 16 N -0.250 5.250 17 C 0.016 3.984 18 C -0.057 4.057 19 C -0.178 4.178 20 C -0.151 4.151 21 H 0.260 0.740 22 H 0.148 0.852 23 H 0.173 0.827 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -8.219 -2.770 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.035 3.965 10 C 0.006 3.994 11 C -0.091 4.091 12 C -0.089 4.089 13 C -0.357 4.357 14 S 0.520 5.480 15 N -0.253 5.253 16 N -0.128 5.128 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.216 4.216 20 C -0.188 4.188 21 H 0.070 0.930 22 H 0.166 0.834 23 H 0.190 0.810 24 H 0.143 0.857 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.430 -8.712 -4.844 11.351 hybrid contribution 0.821 1.831 1.413 2.454 sum -4.609 -6.881 -3.431 8.965 Atomic orbital electron populations 1.70063 1.06541 1.27327 1.48908 1.25492 0.95526 1.01245 0.94239 0.85823 0.79481 0.80904 0.77390 1.19438 1.21550 1.20293 1.20652 0.92610 0.89815 1.51359 0.92915 1.17764 0.99766 0.93870 0.85148 1.19471 0.93382 0.91065 0.95471 1.21357 0.94533 0.94476 0.98734 1.20178 1.00557 0.99073 0.89082 1.25276 0.97687 1.09912 1.02810 1.81658 1.14014 1.53739 0.98560 1.78305 1.04988 1.17871 1.24186 1.71075 1.29826 1.13653 0.98205 1.20565 0.91603 1.05351 0.93758 1.19943 1.00923 0.98759 0.88616 1.23064 0.97986 0.96258 1.04249 1.22618 0.94228 1.01247 1.00754 0.93035 0.83393 0.80968 0.85715 0.89092 0.89851 0.91644 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.90 13.03 21.45 0.28 -46.62 15 2 C 0.04 1.91 5.40 84.65 0.46 2.37 15 3 Si 0.94 41.76 29.55 68.60 2.03 43.79 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.51 -25.78 8.45 25.60 0.22 -25.57 15 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 15 9 C 0.04 1.55 1.56 -53.67 -0.08 1.47 15 10 C 0.01 0.39 5.22 -20.17 -0.11 0.29 15 11 C -0.07 -2.31 9.25 22.12 0.20 -2.11 15 12 C -0.07 -1.98 10.02 21.97 0.22 -1.76 15 13 C -0.23 -7.57 6.79 22.95 0.16 -7.42 15 14 S 0.38 10.45 23.61 -56.49 -1.33 9.12 15 15 N -0.27 -9.54 12.45 37.02 0.46 -9.08 15 16 N -0.25 -9.93 11.66 -52.33 -0.61 -10.54 15 17 C 0.02 0.62 7.17 40.12 0.29 0.91 15 18 C -0.06 -2.38 9.39 22.41 0.21 -2.17 15 19 C -0.18 -6.76 9.94 30.62 0.30 -6.46 15 20 C -0.15 -6.07 9.12 30.62 0.28 -5.79 15 21 H 0.26 13.21 8.32 -92.71 -0.77 12.44 15 22 H 0.15 4.82 6.32 -2.91 -0.02 4.80 15 23 H 0.17 3.57 8.06 -2.91 -0.02 3.55 15 24 H 0.12 5.39 7.99 -2.91 -0.02 5.36 15 25 H 0.09 3.03 8.14 -2.38 -0.02 3.01 15 26 H 0.08 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.06 2.87 8.14 -2.39 -0.02 2.85 15 28 H 0.09 3.18 6.48 -2.39 -0.02 3.17 15 Total: -1.00 -57.57 263.33 4.16 -53.41 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.19 Total: 6.17 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 2.15 Total: -46.25 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: 0.13 Total: -66.24 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 10.45 SS G_CDS: -1.33 Total: 9.12 kcal Total: -57.57 4.16 -53.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.691 kcal (2) G-P(sol) polarization free energy of solvation -57.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds