Wall clock time and date at job start Mon Mar 30 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00264 * 2 1 4 4 H 1.48497 * 109.47354 * 239.99486 * 3 2 1 5 5 H 1.48496 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46967 * 119.99509 * 3 2 1 7 7 C 1.37877 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47255 * 179.97438 * 9 7 2 11 11 C 1.37832 * 120.07430 * 264.97302 * 10 9 7 12 12 C 1.38793 * 120.74976 * 180.02562 * 11 10 9 13 13 C 1.36655 * 120.44679 * 359.97303 * 12 11 10 14 14 C 1.39681 * 119.70467 * 0.02562 * 13 12 11 15 15 C 1.46227 * 134.18244 * 180.23445 * 14 13 12 16 16 C 1.35898 * 106.07171 * 180.12546 * 15 14 13 17 17 C 1.46808 * 125.13121 * 179.91799 * 16 15 14 18 18 O 1.21579 * 120.00277 * 359.72062 * 17 16 15 19 19 O 1.34864 * 119.99655 * 179.72037 * 17 16 15 20 20 O 1.34965 * 109.72682 * 359.65716 * 16 15 14 21 21 C 1.34711 * 110.86642 * 0.22516 * 20 16 15 22 22 H 0.96999 * 119.99967 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47268 * 60.00110 * 9 7 2 24 24 H 1.09003 * 109.47155 * 300.00047 * 9 7 2 25 25 H 1.07997 * 119.62653 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.78094 * 179.97438 * 12 11 10 27 27 H 1.07996 * 120.14674 * 180.02562 * 13 12 11 28 28 H 1.07997 * 126.96424 * 0.02562 * 15 14 13 29 29 H 0.96698 * 117.00093 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5995 -4.2376 -1.1876 12 6 3.4999 -5.2938 -1.2039 13 6 4.0368 -5.7640 -0.0385 14 6 3.6756 -5.1770 1.1764 15 6 4.0443 -5.4128 2.5716 16 6 3.3461 -4.5055 3.3038 17 6 3.4036 -4.3750 4.7649 18 8 4.1139 -5.1180 5.4142 19 8 2.6684 -3.4308 5.3870 20 8 2.5964 -3.7388 2.4843 21 6 2.7624 -4.1059 1.1988 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.1837 -3.8763 -2.1165 26 1 3.7781 -5.7471 -2.1438 27 1 4.7372 -6.5858 -0.0569 28 1 4.7310 -6.1582 2.9448 29 1 2.7389 -3.3835 6.3502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260141601.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:21 Heat of formation + Delta-G solvation = -68.085213 kcal Electronic energy + Delta-G solvation = -16868.690310 eV Core-core repulsion = 13916.099105 eV Total energy + Delta-G solvation = -2952.591205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17097 -39.95014 -37.61037 -36.22168 -33.83206 -32.31956 -30.76354 -29.65020 -27.11790 -24.92395 -23.28685 -22.19574 -20.89915 -20.11970 -18.38099 -17.38333 -17.01114 -16.49163 -16.16214 -15.35287 -15.02222 -14.54704 -14.40861 -13.53721 -13.29284 -12.74956 -12.64520 -12.44627 -11.80573 -11.71117 -11.65543 -11.20310 -11.08763 -11.03358 -10.56468 -10.53996 -10.00562 -9.59023 -9.36177 -8.44838 -8.27100 -7.67602 -6.06694 -4.11050 0.66337 1.78509 2.00979 2.50860 2.97818 3.31427 3.33966 3.35283 3.38787 4.12944 4.44157 4.79364 4.89587 5.16104 5.28906 5.33190 5.49409 5.55648 5.83050 5.92881 6.18127 6.26840 6.45597 6.64078 6.68910 6.88516 7.02351 7.40716 7.50990 7.63559 7.80266 7.87259 8.24298 8.92032 9.52729 11.03207 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.008053 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.120578 B = 3476.035125 C = 4639.497260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.024 4.024 11 C -0.096 4.096 12 C -0.129 4.129 13 C -0.091 4.091 14 C -0.155 4.155 15 C -0.100 4.100 16 C -0.029 4.029 17 C 0.574 3.426 18 O -0.502 6.502 19 O -0.495 6.495 20 O -0.156 6.156 21 C 0.087 3.913 22 H 0.263 0.737 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.135 0.865 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.167 0.833 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -10.051 3.748 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.012 3.988 10 C -0.024 4.024 11 C -0.114 4.114 12 C -0.147 4.147 13 C -0.110 4.110 14 C -0.156 4.156 15 C -0.120 4.120 16 C -0.078 4.078 17 C 0.418 3.582 18 O -0.393 6.393 19 O -0.306 6.306 20 O -0.056 6.056 21 C 0.039 3.961 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.153 0.847 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.185 0.815 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 5.924 -9.916 3.596 12.097 hybrid contribution 0.610 0.929 0.685 1.306 sum 6.534 -8.986 4.281 11.907 Atomic orbital electron populations 1.69936 1.06023 1.27041 1.50085 1.24971 0.94884 0.99219 0.94960 0.86584 0.79568 0.82724 0.78765 1.20102 1.21134 1.20138 1.20946 0.92907 0.89718 1.51633 0.92599 1.18364 0.92367 0.89103 0.98977 1.19816 0.98217 0.97139 0.87253 1.20971 0.97749 0.95522 0.97180 1.20749 0.98449 0.97883 0.97644 1.20075 1.00653 1.00129 0.90107 1.19828 1.02197 1.00112 0.93487 1.22663 0.99615 0.98826 0.90859 1.20398 1.01156 0.97893 0.88303 1.19044 0.76290 0.77323 0.85514 1.90963 1.39529 1.43623 1.65138 1.84762 1.63971 1.53447 1.28392 1.84210 1.55993 1.50428 1.14982 1.19720 0.97980 0.95050 0.83391 0.92690 0.94630 0.94837 0.84710 0.85747 0.85994 0.81523 0.72502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.51 -14.41 9.09 -34.44 -0.31 -14.73 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.25 5.11 -29.03 -0.15 1.10 15 10 C -0.02 -0.51 5.08 -104.49 -0.53 -1.05 15 11 C -0.10 -1.72 9.64 -39.52 -0.38 -2.10 15 12 C -0.13 -1.91 9.98 -39.95 -0.40 -2.31 15 13 C -0.09 -1.36 10.06 -39.62 -0.40 -1.76 15 14 C -0.16 -2.71 6.38 -105.19 -0.67 -3.38 15 15 C -0.10 -1.57 10.81 -37.21 -0.40 -1.97 15 16 C -0.03 -0.50 7.10 -36.96 -0.26 -0.77 15 17 C 0.57 8.86 8.31 34.20 0.28 9.14 15 18 O -0.50 -7.99 17.61 -19.32 -0.34 -8.33 15 19 O -0.50 -6.63 13.44 -42.78 -0.58 -7.20 15 20 O -0.16 -3.32 10.60 1.94 0.02 -3.30 15 21 C 0.09 1.82 7.09 -38.34 -0.27 1.55 15 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.04 0.92 8.05 -51.93 -0.42 0.50 15 24 H 0.03 0.93 8.12 -51.93 -0.42 0.51 15 25 H 0.14 2.22 8.06 -52.49 -0.42 1.80 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.17 2.09 8.06 -52.49 -0.42 1.67 15 29 H 0.42 2.98 9.11 45.56 0.42 3.40 15 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -32.67 273.48 -6.31 -38.98 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -1.66 Total: -0.70 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.59 Total: -14.63 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.89 Total: -18.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.67 -6.31 -38.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141601.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.104 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds