Wall clock time and date at job start Mon Mar 30 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38640 * 120.01654 * 269.72780 * 11 10 9 13 13 O 1.35998 * 120.02458 * 0.02562 * 12 11 10 14 14 C 1.38866 * 119.94367 * 179.76954 * 12 11 10 15 15 F 1.35100 * 120.01099 * 180.22838 * 14 12 11 16 16 C 1.38344 * 119.97671 * 0.52379 * 14 12 11 17 17 C 1.38400 * 120.03231 * 359.72847 * 16 14 12 18 18 F 1.35093 * 119.97508 * 179.97438 * 17 16 14 19 19 C 1.38357 * 120.01419 * 89.99658 * 11 10 9 20 20 F 1.35102 * 119.98870 * 359.97438 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 0.96703 * 114.00127 * 90.00766 * 13 12 11 27 27 H 1.08001 * 119.98801 * 179.70516 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1502 -5.5703 1.2019 13 8 1.4945 -4.9844 2.3799 14 6 0.4517 -6.7705 1.2008 15 9 0.1142 -7.3571 2.3701 16 6 0.1068 -7.3684 0.0018 17 6 0.4527 -6.7681 -1.1963 18 9 0.1158 -7.3533 -2.3664 19 6 1.1451 -5.5669 -1.1966 20 9 1.4819 -4.9820 -2.3669 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 0.8289 -4.3736 2.7248 27 1 -0.4323 -8.3043 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:24 Heat of formation + Delta-G solvation = -167.410245 kcal Electronic energy + Delta-G solvation = -17464.051381 eV Core-core repulsion = 13965.296379 eV Total energy + Delta-G solvation = -3498.755002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.39703 -49.00841 -48.42731 -39.54710 -36.41921 -34.19020 -32.16518 -29.33043 -28.97623 -25.50427 -22.78197 -22.72433 -20.66789 -18.66896 -18.11663 -17.75479 -16.85427 -16.46509 -16.25860 -15.74175 -15.41863 -14.86796 -14.69267 -14.53663 -14.41409 -13.74910 -13.49784 -12.82246 -12.73772 -12.41015 -11.85025 -11.50915 -11.15368 -10.98424 -10.77273 -10.59062 -10.03199 -9.84968 -9.25433 -8.62144 -8.47209 -8.44379 -6.09243 -4.12662 0.70917 0.83611 3.05506 3.28240 3.34764 3.37939 3.58987 3.99167 4.02512 4.37735 4.45373 4.59144 4.92335 5.27176 5.35817 5.52644 5.67681 5.83604 5.88531 6.38672 6.43810 6.56649 6.83180 7.48421 7.59578 7.62747 7.87896 8.27282 8.92868 9.52272 11.01900 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.006465 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.968157 B = 4330.000472 C = 4971.497772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.081 4.081 11 C -0.064 4.064 12 C 0.096 3.904 13 O -0.476 6.476 14 C 0.094 3.906 15 F -0.124 7.124 16 C -0.168 4.168 17 C 0.088 3.912 18 F -0.124 7.124 19 C 0.074 3.926 20 F -0.115 7.115 21 H 0.262 0.738 22 H 0.017 0.983 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.401 0.599 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -13.229 1.225 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.118 4.118 11 C -0.066 4.066 12 C 0.049 3.951 13 O -0.287 6.287 14 C 0.073 3.927 15 F -0.103 7.103 16 C -0.187 4.187 17 C 0.067 3.933 18 F -0.102 7.102 19 C 0.054 3.946 20 F -0.093 7.093 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.259 0.741 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.253 -13.452 1.135 13.502 hybrid contribution -0.196 1.059 -0.195 1.094 sum 0.058 -12.393 0.939 12.429 Atomic orbital electron populations 1.69955 1.06100 1.26846 1.50404 1.25006 0.94860 0.99346 0.95045 0.86551 0.79841 0.83181 0.78203 1.20589 1.21180 1.19754 1.21157 0.93154 0.90542 1.51223 0.92342 1.19055 0.93472 0.90379 0.97498 1.20879 0.98769 0.88885 1.03263 1.20589 0.98185 0.98286 0.89495 1.17902 0.98556 0.91995 0.86658 1.84798 1.47474 1.62535 1.33872 1.17616 0.99729 0.93825 0.81483 1.91518 1.90324 1.83233 1.45218 1.20646 1.05856 1.03102 0.89122 1.17180 1.01580 0.92487 0.82046 1.91533 1.90440 1.83227 1.45000 1.17308 1.02319 0.92291 0.82710 1.91561 1.90145 1.83282 1.44344 0.92848 0.96512 0.96265 0.90898 0.89993 0.74059 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.03 0.81 4.95 -27.88 -0.14 0.67 15 10 C -0.08 -1.60 4.89 -27.89 -0.14 -1.74 15 11 C -0.06 -1.10 5.15 -104.43 -0.54 -1.64 15 12 C 0.10 1.49 6.68 -39.20 -0.26 1.22 15 13 O -0.48 -7.13 12.40 -19.74 -0.24 -7.37 15 14 C 0.09 1.30 7.31 -39.31 -0.29 1.01 15 15 F -0.12 -1.69 17.11 2.25 0.04 -1.65 15 16 C -0.17 -2.11 10.00 -39.48 -0.39 -2.50 15 17 C 0.09 1.27 7.30 -39.37 -0.29 0.98 15 18 F -0.12 -1.78 17.18 2.25 0.04 -1.74 15 19 C 0.07 1.25 7.24 -39.38 -0.29 0.96 15 20 F -0.12 -2.11 16.39 2.25 0.04 -2.07 15 21 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.07 1.45 7.64 -51.93 -0.40 1.05 15 25 H 0.08 1.58 7.52 -51.93 -0.39 1.19 15 26 H 0.40 4.76 9.06 45.56 0.41 5.17 15 27 H 0.16 1.51 8.06 -52.49 -0.42 1.09 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -29.47 259.92 -4.42 -33.89 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -1.18 Total: -1.75 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.74 Total: -14.01 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.74 Total: -25.30 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.24 Total: -7.37 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.47 -4.42 -33.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.518 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds