Wall clock time and date at job start Mon Mar 30 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 7 12 12 C 1.38249 * 119.96184 * 269.72552 * 11 10 9 13 13 C 1.38385 * 120.02501 * 179.76538 * 12 11 10 14 14 F 1.35101 * 120.03116 * 180.27015 * 13 12 11 15 15 C 1.38657 * 119.94124 * 0.48882 * 13 12 11 16 16 F 1.35098 * 120.04199 * 179.74442 * 15 13 12 17 17 C 1.38479 * 119.91735 * 359.76560 * 15 13 12 18 18 Cl 1.73606 * 120.00983 * 180.02562 * 17 15 13 19 19 C 1.38208 * 119.95475 * 90.00196 * 11 10 9 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 24 24 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 25 25 H 1.08004 * 119.98959 * 0.02562 * 12 11 10 26 26 H 1.07993 * 119.97499 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0091 12 6 1.1574 -5.5656 1.2097 13 6 0.4612 -6.7616 1.2172 14 9 0.1296 -7.3436 2.3904 15 6 0.1082 -7.3643 0.0194 16 9 -0.5669 -8.5345 0.0243 17 6 0.4489 -6.7655 -1.1818 18 17 0.0076 -7.5178 -2.6829 19 6 1.1408 -5.5673 -1.1854 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.8678 -3.6059 -0.8902 24 1 2.8760 -3.6028 0.8897 25 1 1.4359 -5.0973 2.1423 26 1 1.4064 -5.1005 -2.1223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260167092.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:56 Heat of formation + Delta-G solvation = -92.160878 kcal Electronic energy + Delta-G solvation = -14853.169411 eV Core-core repulsion = 11786.013841 eV Total energy + Delta-G solvation = -3067.155569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.44298 -48.51996 -39.18348 -36.67693 -34.08537 -32.09985 -30.59960 -28.93410 -25.26800 -23.25952 -22.41398 -20.54417 -17.92785 -17.33883 -16.97762 -16.38610 -16.28097 -14.98854 -14.96096 -14.58525 -14.51430 -13.95926 -13.39850 -13.07509 -12.70428 -12.47606 -12.03087 -11.67250 -11.49430 -11.15469 -11.01155 -10.88807 -10.61237 -10.04517 -9.75308 -9.23787 -8.84292 -8.45370 -8.43251 -6.09751 -4.13745 0.86781 0.92858 1.85960 3.25682 3.31891 3.34174 3.37507 3.74735 4.33457 4.37940 4.63220 4.76566 5.18371 5.26559 5.35169 5.69512 5.90385 5.94125 6.02983 6.39393 6.55915 6.62535 6.84515 7.53224 7.62139 7.87790 8.26525 8.92969 9.51421 11.01190 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.005264 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.753124 B = 5317.678934 C = 5851.471158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.023 4.023 12 C -0.123 4.123 13 C 0.082 3.918 14 F -0.127 7.127 15 C 0.052 3.948 16 F -0.124 7.124 17 C -0.043 4.043 18 Cl -0.047 7.047 19 C -0.093 4.093 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.021 0.979 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -13.279 -1.202 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.118 4.118 11 C -0.023 4.023 12 C -0.142 4.142 13 C 0.062 3.938 14 F -0.105 7.105 15 C 0.031 3.969 16 F -0.103 7.103 17 C -0.071 4.071 18 Cl -0.018 7.018 19 C -0.112 4.112 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.170 0.830 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.607 -13.305 -1.292 13.464 hybrid contribution 0.023 0.524 0.099 0.534 sum 1.630 -12.781 -1.192 12.940 Atomic orbital electron populations 1.69972 1.06091 1.26733 1.50303 1.25023 0.94846 0.99357 0.95099 0.86519 0.80089 0.83646 0.77661 1.19664 1.20962 1.20971 1.21224 0.93134 0.90697 1.51300 0.92343 1.19133 0.93596 0.90322 0.97920 1.20971 0.98503 0.89820 1.02555 1.20313 0.95041 0.96375 0.90606 1.21186 0.99019 0.93148 1.00803 1.17450 1.02161 0.94430 0.79788 1.91527 1.90717 1.83733 1.44525 1.17190 1.01782 0.85740 0.92154 1.91520 1.77556 1.44042 1.97142 1.20727 1.03624 0.96668 0.86091 1.98381 1.91582 1.81494 1.30311 1.21048 0.97553 0.92380 1.00225 0.92886 0.96169 0.96086 0.91065 0.91139 0.82997 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 7 C -0.53 -13.88 9.11 -34.44 -0.31 -14.19 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.03 0.64 4.96 -27.88 -0.14 0.51 15 10 C -0.08 -1.45 5.28 -27.88 -0.15 -1.59 15 11 C -0.02 -0.35 5.13 -104.63 -0.54 -0.89 15 12 C -0.12 -1.81 9.67 -39.52 -0.38 -2.19 15 13 C 0.08 1.23 7.31 -39.37 -0.29 0.94 15 14 F -0.13 -1.90 17.18 2.25 0.04 -1.86 15 15 C 0.05 0.79 7.28 -39.34 -0.29 0.50 15 16 F -0.12 -1.89 16.75 2.25 0.04 -1.85 15 17 C -0.04 -0.63 6.32 -39.45 -0.25 -0.88 15 18 Cl -0.05 -0.61 28.62 -51.86 -1.48 -2.10 15 19 C -0.09 -1.36 9.48 -39.55 -0.37 -1.73 15 20 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 21 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.07 1.20 8.09 -51.93 -0.42 0.78 15 24 H 0.07 1.19 8.08 -51.93 -0.42 0.77 15 25 H 0.15 2.03 8.06 -52.48 -0.42 1.61 15 26 H 0.15 1.99 8.06 -52.49 -0.42 1.57 15 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -27.89 261.32 -6.64 -34.53 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -2.07 Total: -5.27 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.81 Total: -18.03 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.72 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.89 -6.64 -34.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167092.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.631 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds