Wall clock time and date at job start Mon Mar 30 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 7 12 12 C 1.38249 * 119.96184 * 269.72552 * 11 10 9 13 13 C 1.38385 * 120.02501 * 179.76538 * 12 11 10 14 14 F 1.35101 * 120.03116 * 180.27015 * 13 12 11 15 15 C 1.38657 * 119.94124 * 0.48882 * 13 12 11 16 16 F 1.35098 * 120.04199 * 179.74442 * 15 13 12 17 17 C 1.38479 * 119.91735 * 359.76560 * 15 13 12 18 18 Cl 1.73606 * 120.00983 * 180.02562 * 17 15 13 19 19 C 1.38208 * 119.95475 * 90.00196 * 11 10 9 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 24 24 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 25 25 H 1.08004 * 119.98959 * 0.02562 * 12 11 10 26 26 H 1.07993 * 119.97499 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0091 12 6 1.1574 -5.5656 1.2097 13 6 0.4612 -6.7616 1.2172 14 9 0.1296 -7.3436 2.3904 15 6 0.1082 -7.3643 0.0194 16 9 -0.5669 -8.5345 0.0243 17 6 0.4489 -6.7655 -1.1818 18 17 0.0076 -7.5178 -2.6829 19 6 1.1408 -5.5673 -1.1854 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.8678 -3.6059 -0.8902 24 1 2.8760 -3.6028 0.8897 25 1 1.4359 -5.0973 2.1423 26 1 1.4064 -5.1005 -2.1223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167092.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:56 Heat of formation + Delta-G solvation = -105.425725 kcal Electronic energy + Delta-G solvation = -14853.744618 eV Core-core repulsion = 11786.013841 eV Total energy + Delta-G solvation = -3067.730776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.63749 -49.71581 -40.39097 -37.79281 -35.82400 -33.82878 -31.77204 -30.51717 -26.98897 -24.44078 -23.99230 -22.04495 -19.14192 -18.56039 -18.53425 -17.96388 -17.53980 -16.49227 -16.17108 -16.15545 -15.72134 -15.23202 -14.82776 -14.53315 -14.13852 -14.02024 -13.55149 -13.14384 -12.85516 -12.76684 -12.41143 -12.27967 -12.17411 -11.72845 -11.50665 -11.17338 -10.52679 -9.98946 -9.71270 -8.16693 -6.27146 -0.31733 -0.25878 0.73567 1.43764 1.45562 1.57253 2.12623 2.44770 2.57002 3.14674 3.18125 3.46729 3.52289 4.03367 4.14285 4.46939 4.62118 4.74103 4.79215 4.85611 5.15536 5.23526 5.50203 5.56636 5.76768 5.88147 6.25224 6.90904 7.42663 8.94874 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.005264 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.753124 B = 5317.678934 C = 5851.471158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.067 4.067 11 C -0.034 4.034 12 C -0.118 4.118 13 C 0.078 3.922 14 F -0.128 7.128 15 C 0.050 3.950 16 F -0.126 7.126 17 C -0.046 4.046 18 Cl -0.033 7.033 19 C -0.088 4.088 20 H 0.262 0.738 21 H -0.005 1.005 22 H -0.003 1.003 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.165 0.835 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -13.452 -1.416 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.007 4.007 10 C -0.104 4.104 11 C -0.034 4.034 12 C -0.136 4.136 13 C 0.057 3.943 14 F -0.106 7.106 15 C 0.029 3.971 16 F -0.104 7.104 17 C -0.073 4.073 18 Cl -0.004 7.004 19 C -0.106 4.106 20 H 0.071 0.929 21 H 0.013 0.987 22 H 0.015 0.985 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.182 0.818 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.758 -13.494 -1.507 13.855 hybrid contribution -0.365 0.505 0.146 0.640 sum 2.393 -12.989 -1.360 13.278 Atomic orbital electron populations 1.70103 1.07806 1.27595 1.51887 1.25923 0.95627 1.03217 0.94948 0.85462 0.79363 0.79157 0.77453 1.18219 1.20822 1.20872 1.21732 0.93851 0.91932 1.50074 0.91412 1.18996 0.94130 0.92102 0.95486 1.20687 0.97332 0.88578 1.03775 1.20105 0.95971 0.95961 0.91399 1.21295 0.98307 0.92897 1.01124 1.17455 1.02475 0.94573 0.79780 1.91524 1.90760 1.83747 1.44574 1.17326 1.01586 0.85666 0.92480 1.91516 1.77586 1.44145 1.97172 1.20730 1.03462 0.96630 0.86526 1.98387 1.91438 1.81230 1.29361 1.21177 0.96806 0.92212 1.00445 0.92928 0.98678 0.98499 0.89828 0.90005 0.81770 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 15 2 C 0.00 0.03 5.46 84.66 0.46 0.50 15 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.54 -28.16 9.11 25.60 0.23 -27.92 15 8 H 0.07 3.34 7.74 -2.92 -0.02 3.32 15 9 C 0.03 1.42 4.96 29.85 0.15 1.57 15 10 C -0.07 -2.28 5.28 29.85 0.16 -2.12 15 11 C -0.03 -1.01 5.13 -19.87 -0.10 -1.11 15 12 C -0.12 -3.31 9.67 22.31 0.22 -3.10 15 13 C 0.08 2.22 7.31 22.41 0.16 2.39 15 14 F -0.13 -3.68 17.18 44.97 0.77 -2.91 15 15 C 0.05 1.45 7.28 22.43 0.16 1.61 15 16 F -0.13 -3.66 16.75 44.97 0.75 -2.91 15 17 C -0.05 -1.25 6.32 22.36 0.14 -1.11 15 18 Cl -0.03 -0.82 28.62 -2.72 -0.08 -0.89 15 19 C -0.09 -2.42 9.48 22.29 0.21 -2.21 15 20 H 0.26 14.51 8.31 -92.71 -0.77 13.74 15 21 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 15 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 15 23 H 0.08 2.64 8.09 -2.39 -0.02 2.63 15 24 H 0.08 2.60 8.08 -2.38 -0.02 2.59 15 25 H 0.16 4.15 8.06 -2.91 -0.02 4.12 15 26 H 0.16 4.03 8.06 -2.91 -0.02 4.00 15 Total: -1.00 -58.38 261.32 6.76 -51.62 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: 1.20 Total: -3.20 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 1.79 Total: -31.51 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.44 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.53 Total: -5.82 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Total: -58.38 6.76 -51.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167092.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.807 kcal (2) G-P(sol) polarization free energy of solvation -58.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds