Wall clock time and date at job start Mon Mar 30 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00151 * 2 1 4 4 C 1.38645 * 120.02613 * 0.02562 * 3 2 1 5 5 C 1.38354 * 119.97078 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.98875 * 179.97438 * 5 4 3 7 7 C 1.38647 * 120.02516 * 0.02820 * 5 4 3 8 8 F 1.35099 * 119.97376 * 179.97438 * 7 5 4 9 9 C 1.38406 * 120.05486 * 359.94792 * 7 5 4 10 10 C 1.50699 * 119.98322 * 180.02562 * 9 7 5 11 11 C 1.50707 * 109.47048 * 270.02375 * 10 9 7 12 12 H 1.07997 * 119.99863 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99673 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00438 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99664 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47007 * 90.00356 * 15 13 11 17 17 H 1.48502 * 109.47202 * 210.00055 * 15 13 11 18 18 H 1.48497 * 109.47264 * 329.99859 * 15 13 11 19 19 C 1.38347 * 120.02790 * 0.05087 * 9 7 5 20 20 F 1.35096 * 120.01183 * 179.97438 * 19 9 7 21 21 H 1.09000 * 109.47045 * 59.99611 * 1 2 3 22 22 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47088 * 300.00380 * 1 2 3 24 24 H 1.08001 * 120.01570 * 359.70599 * 4 3 2 25 25 H 1.08996 * 109.47669 * 30.02354 * 10 9 7 26 26 H 1.09003 * 109.46995 * 150.02507 * 10 9 7 27 27 H 0.96995 * 120.00002 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2919 2.3749 0.0005 5 6 1.9212 3.6070 0.0011 6 9 1.1863 4.7407 0.0011 7 6 3.3058 3.6788 0.0005 8 9 3.9193 4.8825 0.0005 9 6 4.0601 2.5184 0.0004 10 6 5.5650 2.5983 0.0004 11 6 6.0665 2.6255 -1.4205 12 1 5.3656 2.5891 -2.2413 13 6 7.4202 2.6970 -1.6724 14 7 8.2737 2.7419 -0.6729 15 14 8.0419 2.7300 -3.4337 16 1 8.1329 4.1369 -3.9001 17 1 9.3851 2.0999 -3.4964 18 1 7.1020 1.9795 -4.3046 19 6 3.4331 1.2851 -0.0001 20 9 4.1697 0.1526 -0.0006 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2133 2.3192 -0.0038 25 1 5.8807 3.5060 0.5145 26 1 5.9750 1.7286 0.5138 27 1 9.2260 2.7918 -0.8502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260169860.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:21 Heat of formation + Delta-G solvation = -171.795680 kcal Electronic energy + Delta-G solvation = -17698.155348 eV Core-core repulsion = 14199.210179 eV Total energy + Delta-G solvation = -3498.945169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.52830 -49.87104 -49.58114 -41.03016 -38.53075 -35.45217 -33.03939 -30.88825 -29.31448 -28.03697 -25.60760 -23.82816 -22.68176 -19.44592 -19.23446 -18.97753 -18.68481 -17.63794 -17.57744 -16.80935 -16.67571 -16.61639 -16.15279 -15.90244 -15.72532 -15.39092 -14.84496 -14.44993 -14.31262 -13.63151 -13.31451 -13.05210 -12.95473 -12.60906 -12.58392 -12.46646 -11.94403 -11.81422 -11.48556 -10.66400 -9.88296 -9.25654 -8.27091 -6.40866 -0.33033 -0.17574 1.38496 1.40421 1.51502 1.97702 2.06668 2.38737 2.66253 2.98486 3.06267 3.19600 3.44073 3.77492 4.20022 4.26646 4.45232 4.51762 4.55817 4.63568 4.79927 4.89819 5.16226 5.34284 5.44824 5.62782 5.99700 6.12806 6.67630 7.27512 8.83849 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.007969 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.363744 B = 3512.897440 C = 4188.940366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.317 6.317 3 C 0.132 3.868 4 C -0.186 4.186 5 C 0.108 3.892 6 F -0.120 7.120 7 C 0.034 3.966 8 F -0.134 7.134 9 C -0.067 4.067 10 C 0.058 3.942 11 C -0.535 4.535 12 H 0.056 0.944 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.969 3.031 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.264 1.264 19 C 0.063 3.937 20 F -0.132 7.132 21 H 0.076 0.924 22 H 0.126 0.874 23 H 0.079 0.921 24 H 0.203 0.797 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -2.982 1.079 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.205 4.205 5 C 0.087 3.913 6 F -0.099 7.099 7 C 0.013 3.987 8 F -0.113 7.113 9 C -0.069 4.069 10 C 0.021 3.979 11 C -0.573 4.573 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.564 5.564 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.188 1.188 19 C 0.043 3.957 20 F -0.111 7.111 21 H 0.095 0.905 22 H 0.145 0.855 23 H 0.098 0.902 24 H 0.220 0.780 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.538 -3.134 1.129 17.851 hybrid contribution 0.905 0.502 -0.569 1.181 sum -16.633 -2.632 0.560 16.849 Atomic orbital electron populations 1.23644 0.74771 1.06668 1.03469 1.86206 1.24889 1.23988 1.87969 1.18464 0.89027 0.86554 0.97533 1.21010 1.02951 0.87285 1.09260 1.17202 0.85883 0.83687 1.04508 1.91526 1.76026 1.48500 1.93832 1.17230 0.89346 0.80924 1.11174 1.91471 1.83523 1.41940 1.94355 1.20157 0.99138 0.90352 0.97266 1.18006 0.84594 0.97404 0.97859 1.21214 0.92472 1.52155 0.91455 0.92529 1.25917 0.96803 0.94067 1.02231 1.70064 1.02899 1.50272 1.33202 0.85382 0.77839 0.78743 0.78758 1.19533 1.20093 1.18834 1.16632 0.86744 0.81855 1.10505 1.91465 1.77238 1.48203 1.94192 0.90503 0.85541 0.90219 0.77984 0.96368 0.96240 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 15 2 O -0.32 -8.18 10.36 -93.56 -0.97 -9.15 15 3 C 0.13 4.01 6.69 22.52 0.15 4.16 15 4 C -0.19 -4.62 9.01 22.39 0.20 -4.42 15 5 C 0.11 3.40 7.30 22.40 0.16 3.56 15 6 F -0.12 -3.55 17.18 44.97 0.77 -2.78 15 7 C 0.03 1.37 7.24 22.41 0.16 1.54 15 8 F -0.13 -6.02 16.38 44.97 0.74 -5.28 15 9 C -0.07 -3.04 5.08 -19.80 -0.10 -3.14 15 10 C 0.06 3.22 4.74 29.10 0.14 3.36 15 11 C -0.54 -31.35 9.09 25.60 0.23 -31.11 15 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 15 13 C 0.01 0.51 5.46 84.65 0.46 0.98 15 14 N -0.93 -56.42 13.29 21.45 0.28 -56.14 15 15 Si 0.97 44.94 29.54 68.60 2.03 46.96 15 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 19 C 0.06 2.55 7.25 22.45 0.16 2.71 15 20 F -0.13 -5.92 16.31 44.97 0.73 -5.18 15 21 H 0.08 0.74 7.66 -2.39 -0.02 0.72 15 22 H 0.13 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.08 0.71 7.66 -2.39 -0.02 0.70 15 24 H 0.20 2.94 6.30 -2.91 -0.02 2.93 15 25 H 0.02 1.07 7.64 -2.39 -0.02 1.05 15 26 H 0.02 1.14 7.64 -2.39 -0.02 1.12 15 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 Total: -1.00 -69.06 257.14 7.49 -61.58 By element: Atomic # 1 Polarization: -10.06 SS G_CDS: 1.22 Total: -8.84 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 2.69 Total: -21.17 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.97 Total: -9.15 kcal Atomic # 9 Polarization: -15.49 SS G_CDS: 2.24 Total: -13.25 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.06 7.49 -61.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260169860.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.219 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds