Wall clock time and date at job start Mon Mar 30 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47165 * 120.00451 * 2 1 3 5 5 H 1.08004 * 120.00149 * 86.59426 * 4 2 1 6 6 C 1.37875 * 120.00147 * 266.58811 * 4 2 1 7 7 N 1.31516 * 120.00254 * 177.86864 * 6 4 2 8 8 Si 1.86801 * 119.99894 * 357.87600 * 6 4 2 9 9 H 1.48503 * 109.47012 * 268.79530 * 8 6 4 10 10 H 1.48501 * 109.47424 * 28.79580 * 8 6 4 11 11 H 1.48501 * 109.47139 * 148.79728 * 8 6 4 12 12 C 1.50701 * 109.47014 * 240.00378 * 2 1 3 13 13 C 1.38245 * 119.99419 * 299.72599 * 12 2 1 14 14 C 1.38326 * 120.05837 * 179.76573 * 13 12 2 15 15 Cl 1.73591 * 119.98006 * 180.25439 * 14 13 12 16 16 C 1.38367 * 120.04070 * 0.50593 * 14 13 12 17 17 C 1.38363 * 119.98808 * 359.74982 * 16 14 13 18 18 F 1.35094 * 120.02626 * 180.02562 * 17 16 14 19 19 C 1.38366 * 119.99105 * 119.99694 * 12 2 1 20 20 F 1.35100 * 120.02471 * 359.96038 * 19 12 2 21 21 H 1.09004 * 109.46849 * 61.03626 * 1 2 3 22 22 H 1.08995 * 109.47247 * 181.03838 * 1 2 3 23 23 H 1.09005 * 109.46630 * 301.04070 * 1 2 3 24 24 H 0.96997 * 120.00389 * 179.97438 * 7 6 4 25 25 H 1.07998 * 119.96893 * 0.02562 * 13 12 2 26 26 H 1.07996 * 120.00788 * 179.76485 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.1600 -1.7829 1.2204 6 6 2.3291 0.0085 2.3687 7 7 2.7275 -0.6157 3.4556 8 14 2.1653 1.8693 2.3674 9 1 3.4607 2.4800 1.9746 10 1 1.1140 2.2730 1.3994 11 1 1.7910 2.3343 3.7272 12 6 2.0323 -0.7103 -1.2305 13 6 1.7029 -2.0355 -1.4464 14 6 2.1593 -2.6874 -2.5779 15 17 1.7390 -4.3495 -2.8502 16 6 2.9548 -2.0170 -3.4901 17 6 3.2900 -0.6922 -3.2732 18 9 4.0663 -0.0368 -4.1636 19 6 2.8277 -0.0376 -2.1412 20 9 3.1536 1.2560 -1.9281 21 1 -0.3633 0.4977 -0.8992 22 1 -0.3633 -1.0274 0.0186 23 1 -0.3633 0.5300 0.8806 24 1 2.9366 -0.1099 4.2564 25 1 1.0853 -2.5610 -0.7331 26 1 3.3139 -2.5276 -4.3714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174151.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:26 Heat of formation + Delta-G solvation = -85.521529 kcal Electronic energy + Delta-G solvation = -15531.791429 eV Core-core repulsion = 12464.923763 eV Total energy + Delta-G solvation = -3066.867666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.17712 -48.22281 -38.95882 -36.43359 -34.52955 -31.90787 -29.83745 -29.11718 -25.35287 -23.51143 -22.49892 -20.06180 -17.59252 -17.54604 -16.77443 -16.39002 -16.00459 -15.08596 -14.67707 -14.51923 -14.22408 -13.60089 -12.99431 -12.91832 -12.61739 -12.36566 -12.25559 -11.81490 -11.37459 -11.10156 -10.98775 -10.71440 -10.63736 -9.99641 -9.87802 -9.31769 -8.69728 -8.48483 -8.27809 -6.22473 -4.24696 1.08087 1.25478 2.13014 3.22189 3.30838 3.33109 3.57052 4.06353 4.30388 4.57963 4.88484 5.13218 5.16606 5.22070 5.68488 5.88919 5.95123 6.21686 6.30293 6.43531 6.49975 6.59313 6.92583 6.99344 7.19819 7.51596 8.30487 8.79160 9.37552 10.89404 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.008798 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.792688 B = 3181.803667 C = 3945.572939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.514 4.514 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.870 3.130 9 H -0.274 1.274 10 H -0.260 1.260 11 H -0.285 1.285 12 C -0.020 4.020 13 C -0.082 4.082 14 C -0.018 4.018 15 Cl -0.064 7.064 16 C -0.146 4.146 17 C 0.076 3.924 18 F -0.131 7.131 19 C 0.059 3.941 20 F -0.126 7.126 21 H 0.026 0.974 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.151 0.849 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -2.233 -12.117 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.551 4.551 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.697 3.303 9 H -0.199 1.199 10 H -0.184 1.184 11 H -0.211 1.211 12 C -0.022 4.022 13 C -0.100 4.100 14 C -0.045 4.045 15 Cl -0.035 7.035 16 C -0.165 4.165 17 C 0.055 3.945 18 F -0.109 7.109 19 C 0.039 3.961 20 F -0.105 7.105 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.169 0.831 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.979 -2.283 -11.954 12.329 hybrid contribution 0.313 1.146 -0.018 1.188 sum -1.666 -1.137 -11.971 12.140 Atomic orbital electron populations 1.22038 0.97065 1.00883 0.99360 1.18402 0.93375 0.96370 0.90115 0.93067 1.20846 1.45080 0.95739 0.93471 0.90121 1.24996 0.93900 0.98378 0.95286 1.69873 1.44475 1.36126 1.02196 0.86947 0.79520 0.86216 0.77663 1.19926 1.18411 1.21108 1.20443 0.93144 0.93780 0.94815 1.20933 1.00180 0.93443 0.95481 1.20583 1.00760 0.86382 0.96800 1.98358 1.92283 1.16667 1.96231 1.20591 1.01861 0.92385 1.01700 1.17350 0.97014 0.91177 0.88942 1.91497 1.72368 1.80755 1.66314 1.17673 1.02433 0.80350 0.95692 1.91490 1.91009 1.33323 1.94646 0.95488 0.92985 0.92778 0.92304 0.83091 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.90 37.16 0.33 -2.32 15 2 C 0.04 0.81 2.02 -92.93 -0.19 0.62 15 3 H 0.05 1.19 4.36 -51.93 -0.23 0.96 15 4 C -0.51 -13.43 8.64 -34.44 -0.30 -13.73 15 5 H 0.08 2.25 7.62 -52.48 -0.40 1.85 15 6 C 0.08 2.13 5.47 -17.82 -0.10 2.03 15 7 N -0.89 -25.99 13.96 55.43 0.77 -25.21 15 8 Si 0.87 20.71 26.75 -169.99 -4.55 16.16 15 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.26 -5.85 6.43 56.52 0.36 -5.49 15 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 12 C -0.02 -0.40 4.78 -104.57 -0.50 -0.90 15 13 C -0.08 -1.42 8.38 -39.55 -0.33 -1.75 15 14 C -0.02 -0.28 6.32 -39.50 -0.25 -0.53 15 15 Cl -0.06 -0.85 28.95 -51.86 -1.50 -2.35 15 16 C -0.15 -2.12 9.81 -39.49 -0.39 -2.51 15 17 C 0.08 1.26 7.31 -39.37 -0.29 0.97 15 18 F -0.13 -2.13 17.18 2.25 0.04 -2.09 15 19 C 0.06 1.12 7.25 -39.37 -0.29 0.84 15 20 F -0.13 -2.55 16.11 2.25 0.04 -2.51 15 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.05 0.95 7.44 -51.93 -0.39 0.56 15 23 H 0.05 1.08 7.60 -51.93 -0.39 0.69 15 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.15 2.59 7.51 -52.49 -0.39 2.19 15 26 H 0.15 1.72 8.06 -52.49 -0.42 1.30 15 LS Contribution 251.51 15.07 3.79 3.79 Total: -1.00 -27.37 251.51 -5.52 -32.89 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -1.82 Total: -3.39 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.29 Total: -17.28 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.07 Total: -4.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.55 Total: 16.16 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.37 -5.52 -32.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174151.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.630 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds