Wall clock time and date at job start Mon Mar 30 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47165 * 120.00451 * 2 1 3 5 5 H 1.08004 * 120.00149 * 86.59426 * 4 2 1 6 6 C 1.37875 * 120.00147 * 266.58811 * 4 2 1 7 7 N 1.31516 * 120.00254 * 177.86864 * 6 4 2 8 8 Si 1.86801 * 119.99894 * 357.87600 * 6 4 2 9 9 H 1.48503 * 109.47012 * 268.79530 * 8 6 4 10 10 H 1.48501 * 109.47424 * 28.79580 * 8 6 4 11 11 H 1.48501 * 109.47139 * 148.79728 * 8 6 4 12 12 C 1.50701 * 109.47014 * 240.00378 * 2 1 3 13 13 C 1.38245 * 119.99419 * 299.72599 * 12 2 1 14 14 C 1.38326 * 120.05837 * 179.76573 * 13 12 2 15 15 Cl 1.73591 * 119.98006 * 180.25439 * 14 13 12 16 16 C 1.38367 * 120.04070 * 0.50593 * 14 13 12 17 17 C 1.38363 * 119.98808 * 359.74982 * 16 14 13 18 18 F 1.35094 * 120.02626 * 180.02562 * 17 16 14 19 19 C 1.38366 * 119.99105 * 119.99694 * 12 2 1 20 20 F 1.35100 * 120.02471 * 359.96038 * 19 12 2 21 21 H 1.09004 * 109.46849 * 61.03626 * 1 2 3 22 22 H 1.08995 * 109.47247 * 181.03838 * 1 2 3 23 23 H 1.09005 * 109.46630 * 301.04070 * 1 2 3 24 24 H 0.96997 * 120.00389 * 179.97438 * 7 6 4 25 25 H 1.07998 * 119.96893 * 0.02562 * 13 12 2 26 26 H 1.07996 * 120.00788 * 179.76485 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.1600 -1.7829 1.2204 6 6 2.3291 0.0085 2.3687 7 7 2.7275 -0.6157 3.4556 8 14 2.1653 1.8693 2.3674 9 1 3.4607 2.4800 1.9746 10 1 1.1140 2.2730 1.3994 11 1 1.7910 2.3343 3.7272 12 6 2.0323 -0.7103 -1.2305 13 6 1.7029 -2.0355 -1.4464 14 6 2.1593 -2.6874 -2.5779 15 17 1.7390 -4.3495 -2.8502 16 6 2.9548 -2.0170 -3.4901 17 6 3.2900 -0.6922 -3.2732 18 9 4.0663 -0.0368 -4.1636 19 6 2.8277 -0.0376 -2.1412 20 9 3.1536 1.2560 -1.9281 21 1 -0.3633 0.4977 -0.8992 22 1 -0.3633 -1.0274 0.0186 23 1 -0.3633 0.5300 0.8806 24 1 2.9366 -0.1099 4.2564 25 1 1.0853 -2.5610 -0.7331 26 1 3.3139 -2.5276 -4.3714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174151.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:26 Heat of formation + Delta-G solvation = -99.784774 kcal Electronic energy + Delta-G solvation = -15532.409929 eV Core-core repulsion = 12464.923763 eV Total energy + Delta-G solvation = -3067.486166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.55654 -49.63696 -40.33520 -37.65092 -36.19086 -33.82887 -31.18183 -30.59445 -27.23512 -25.00577 -23.86488 -21.69288 -19.32321 -18.97020 -18.19173 -17.99546 -17.40211 -16.51403 -16.28333 -16.04293 -15.64325 -15.18091 -14.58967 -14.26992 -14.24997 -14.05102 -13.62290 -13.35697 -13.02096 -12.81137 -12.43884 -12.15106 -11.98448 -11.78387 -11.59658 -11.18555 -10.76492 -9.87224 -9.64300 -8.31631 -6.36078 -0.27639 -0.07375 0.91569 1.32673 1.36705 1.44856 2.20325 2.32279 2.71591 3.05192 3.24760 3.55910 3.80024 3.92960 4.27178 4.38951 4.62153 4.71772 4.86908 4.94592 4.98112 5.06668 5.31250 5.50969 5.60716 5.62900 6.24124 6.69963 7.29136 8.83801 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.008798 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.792688 B = 3181.803667 C = 3945.572939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.034 3.966 3 H 0.041 0.959 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.923 3.077 9 H -0.277 1.277 10 H -0.239 1.239 11 H -0.283 1.283 12 C -0.043 4.043 13 C -0.084 4.084 14 C -0.012 4.012 15 Cl -0.039 7.039 16 C -0.122 4.122 17 C 0.078 3.922 18 F -0.127 7.127 19 C 0.040 3.960 20 F -0.139 7.139 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.267 0.733 25 H 0.149 0.851 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -2.446 -14.327 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.059 0.941 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.747 3.253 9 H -0.202 1.202 10 H -0.162 1.162 11 H -0.209 1.209 12 C -0.045 4.045 13 C -0.103 4.103 14 C -0.039 4.039 15 Cl -0.010 7.010 16 C -0.141 4.141 17 C 0.058 3.942 18 F -0.106 7.106 19 C 0.020 3.980 20 F -0.117 7.117 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.166 0.834 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.450 -2.496 -14.192 14.617 hybrid contribution 0.462 1.044 0.543 1.264 sum -1.988 -1.452 -13.649 13.869 Atomic orbital electron populations 1.21929 0.94925 1.01801 1.00247 1.18307 0.95056 0.95501 0.89661 0.94131 1.21089 1.43609 0.94723 0.95095 0.93055 1.25739 0.94193 1.02590 0.95076 1.70001 1.47123 1.37785 1.03048 0.86094 0.79830 0.81277 0.78110 1.20247 1.16238 1.20860 1.20178 0.94850 0.94720 0.94730 1.20919 1.00330 0.92749 0.96317 1.20585 0.99953 0.87503 0.95896 1.98376 1.92038 1.14563 1.96010 1.20935 0.99844 0.91281 1.02084 1.17360 0.96861 0.91725 0.88253 1.91510 1.72227 1.80872 1.65966 1.17870 1.03186 0.80145 0.96826 1.91450 1.91227 1.34185 1.94865 0.92923 0.92090 0.93557 0.92394 0.83379 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.90 71.98 0.64 -4.32 15 2 C 0.03 1.48 2.02 -12.29 -0.02 1.46 15 3 H 0.04 1.86 4.36 -2.39 -0.01 1.85 15 4 C -0.51 -26.99 8.64 25.60 0.22 -26.76 15 5 H 0.05 2.96 7.62 -2.91 -0.02 2.94 15 6 C 0.02 1.24 5.47 84.65 0.46 1.71 15 7 N -0.94 -56.54 13.96 21.45 0.30 -56.24 15 8 Si 0.92 42.97 26.75 68.60 1.83 44.80 15 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 10 H -0.24 -10.22 6.43 99.48 0.64 -9.58 15 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 12 C -0.04 -1.67 4.78 -19.83 -0.09 -1.76 15 13 C -0.08 -2.82 8.38 22.29 0.19 -2.63 15 14 C -0.01 -0.34 6.32 22.32 0.14 -0.20 15 15 Cl -0.04 -0.91 28.95 -2.72 -0.08 -0.99 15 16 C -0.12 -3.11 9.81 22.33 0.22 -2.90 15 17 C 0.08 2.42 7.31 22.41 0.16 2.58 15 18 F -0.13 -3.82 17.18 44.97 0.77 -3.05 15 19 C 0.04 1.47 7.25 22.41 0.16 1.64 15 20 F -0.14 -5.51 16.11 44.97 0.72 -4.79 15 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.06 2.15 7.44 -2.39 -0.02 2.13 15 23 H 0.05 1.79 7.60 -2.38 -0.02 1.77 15 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 25 H 0.15 4.97 7.51 -2.91 -0.02 4.95 15 26 H 0.18 3.35 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -59.25 251.51 6.78 -52.47 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.15 Total: -1.02 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 2.08 Total: -31.19 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.30 Total: -56.24 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 1.50 Total: -7.83 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.83 Total: 44.80 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -59.25 6.78 -52.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174151.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.316 kcal (2) G-P(sol) polarization free energy of solvation -59.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds