Wall clock time and date at job start Mon Mar 30 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47568 * 2 1 4 4 C 1.50701 * 109.47333 * 239.99665 * 2 1 3 5 5 H 1.07996 * 120.00147 * 240.00323 * 4 2 1 6 6 C 1.37881 * 119.99814 * 60.00367 * 4 2 1 7 7 N 1.31512 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47044 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47261 * 120.00088 * 8 6 4 11 11 H 1.48499 * 109.46836 * 239.99958 * 8 6 4 12 12 C 1.50706 * 109.46986 * 119.99896 * 2 1 3 13 13 C 1.38254 * 119.98987 * 59.72468 * 12 2 1 14 14 C 1.38321 * 120.05287 * 180.27445 * 13 12 2 15 15 Cl 1.73601 * 119.97428 * 179.97438 * 14 13 12 16 16 C 1.38359 * 120.04590 * 0.02562 * 14 13 12 17 17 C 1.38360 * 119.99083 * 359.97438 * 16 14 13 18 18 F 1.35097 * 120.02892 * 180.02562 * 17 16 14 19 19 C 1.38365 * 119.99645 * 239.99928 * 12 2 1 20 20 F 1.35099 * 120.02061 * 359.70217 * 19 12 2 21 21 H 1.08998 * 109.46817 * 60.00051 * 1 2 3 22 22 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46783 * 300.00138 * 1 2 3 24 24 H 0.97005 * 119.99846 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.96926 * 0.27222 * 13 12 2 26 26 H 1.08003 * 120.00836 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8161 11 1 3.1468 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2305 13 6 1.6935 -2.0324 1.4520 14 6 2.1491 -2.6840 2.5838 15 17 1.7219 -4.3437 2.8602 16 6 2.9443 -2.0136 3.4963 17 6 3.2845 -0.6906 3.2765 18 9 4.0613 -0.0354 4.1667 19 6 2.8278 -0.0379 2.1413 20 9 3.1594 1.2537 1.9248 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1612 -3.4845 25 1 1.0725 -2.5566 0.7407 26 1 3.3000 -2.5231 4.3797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174156.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:28 Heat of formation + Delta-G solvation = -86.725508 kcal Electronic energy + Delta-G solvation = -15466.171547 eV Core-core repulsion = 12399.251673 eV Total energy + Delta-G solvation = -3066.919874 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.10925 -48.13462 -38.87491 -36.39035 -34.49454 -31.63898 -29.77439 -28.59258 -25.28628 -23.46567 -22.38965 -20.18951 -17.54501 -17.12852 -16.75050 -16.10108 -15.83685 -15.05781 -14.70746 -14.54909 -14.16387 -13.38675 -13.04416 -12.90322 -12.53717 -12.13721 -11.80324 -11.35996 -11.17794 -11.01860 -10.92803 -10.65134 -10.39752 -10.26872 -9.75884 -9.22106 -8.51066 -8.40806 -8.20166 -6.14102 -4.22730 1.13831 1.31394 2.16129 3.23044 3.31674 3.35231 3.63844 4.12322 4.34178 4.63779 5.00394 5.17214 5.22740 5.29941 5.75748 5.97253 6.19263 6.36721 6.52016 6.73063 6.85036 6.98248 7.11438 7.53580 7.72850 7.91919 8.17327 8.79009 9.43074 10.91789 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.008300 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.600036 B = 3372.537263 C = 4136.790840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 H 0.048 0.952 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 C -0.025 4.025 13 C -0.083 4.083 14 C -0.021 4.021 15 Cl -0.067 7.067 16 C -0.147 4.147 17 C 0.072 3.928 18 F -0.132 7.132 19 C 0.061 3.939 20 F -0.124 7.124 21 H 0.091 0.909 22 H 0.032 0.968 23 H 0.012 0.988 24 H 0.263 0.737 25 H 0.151 0.849 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -5.751 9.502 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 H 0.066 0.934 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.026 4.026 13 C -0.102 4.102 14 C -0.048 4.048 15 Cl -0.038 7.038 16 C -0.167 4.167 17 C 0.052 3.948 18 F -0.110 7.110 19 C 0.041 3.959 20 F -0.102 7.102 21 H 0.110 0.890 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.104 -5.703 9.415 11.063 hybrid contribution 0.571 -0.223 -0.645 0.889 sum 1.674 -5.926 8.771 10.717 Atomic orbital electron populations 1.21813 0.96613 0.99736 1.00902 1.17991 0.93547 0.96158 0.87260 0.93366 1.21053 1.32046 1.12757 0.89464 0.92063 1.24943 0.94783 0.94898 0.99057 1.69885 1.36117 1.22610 1.23696 0.86461 0.78731 0.79732 0.82718 1.19604 1.20826 1.20879 1.20749 0.92358 0.93555 0.95931 1.20993 0.99979 0.93708 0.95493 1.20603 1.00944 0.86341 0.96908 1.98353 1.92172 1.17106 1.96198 1.20570 1.02052 0.92453 1.01610 1.17385 0.97210 0.91237 0.88983 1.91492 1.72365 1.80779 1.66393 1.17722 1.02146 0.80540 0.95479 1.91502 1.90773 1.33371 1.94559 0.89020 0.94840 0.96930 0.92714 0.83107 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.78 37.16 0.33 -2.68 15 2 C 0.07 1.64 2.46 -92.92 -0.23 1.41 15 3 H 0.05 1.27 7.12 -51.93 -0.37 0.90 15 4 C -0.52 -13.31 8.25 -34.44 -0.28 -13.59 15 5 H 0.06 1.57 7.61 -52.49 -0.40 1.17 15 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -24.13 11.32 55.43 0.63 -23.50 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 12 C -0.02 -0.50 4.74 -104.57 -0.50 -1.00 15 13 C -0.08 -1.49 8.50 -39.54 -0.34 -1.82 15 14 C -0.02 -0.33 6.32 -39.51 -0.25 -0.58 15 15 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.40 15 16 C -0.15 -2.19 9.81 -39.49 -0.39 -2.58 15 17 C 0.07 1.23 7.31 -39.37 -0.29 0.94 15 18 F -0.13 -2.19 17.18 2.25 0.04 -2.15 15 19 C 0.06 1.20 7.25 -39.37 -0.29 0.92 15 20 F -0.12 -2.58 16.11 2.25 0.04 -2.54 15 21 H 0.09 2.29 6.07 -51.93 -0.32 1.97 15 22 H 0.03 0.70 7.38 -51.93 -0.38 0.31 15 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 25 H 0.15 2.68 7.57 -52.49 -0.40 2.28 15 26 H 0.15 1.75 8.06 -52.48 -0.42 1.33 15 LS Contribution 253.38 15.07 3.82 3.82 Total: -1.00 -26.05 253.38 -6.17 -32.22 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -1.84 Total: -3.50 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.32 Total: -17.34 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.63 Total: -23.50 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.69 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.05 -6.17 -32.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174156.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.508 kcal (2) G-P(sol) polarization free energy of solvation -26.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds