Wall clock time and date at job start Mon Mar 30 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47392 * 240.00057 * 3 2 1 5 5 H 1.48506 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47345 * 120.00167 * 3 2 1 7 7 C 1.37878 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.38838 * 119.77954 * 269.97580 * 10 9 7 12 12 C 1.37796 * 120.74702 * 180.02562 * 11 10 9 13 13 C 1.39027 * 119.85493 * 359.97438 * 12 11 10 14 14 O 1.34714 * 133.22811 * 179.69060 * 13 12 11 15 15 C 1.34956 * 110.86625 * 179.91580 * 14 13 12 16 16 C 1.46803 * 125.14735 * 180.16055 * 15 14 13 17 17 O 1.21573 * 120.00470 * 180.25737 * 16 15 14 18 18 O 1.34861 * 119.99560 * 0.25184 * 16 15 14 19 19 C 1.35900 * 109.71245 * 0.37963 * 15 14 13 20 20 C 1.40745 * 119.16107 * 0.02562 * 13 12 11 21 21 C 1.36621 * 119.77588 * 90.00337 * 10 9 7 22 22 H 0.97004 * 120.00166 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.47081 * 59.99417 * 9 7 2 24 24 H 1.09005 * 109.46870 * 299.99696 * 9 7 2 25 25 H 1.08003 * 119.62766 * 0.02562 * 11 10 9 26 26 H 1.08002 * 120.06845 * 179.97438 * 12 11 10 27 27 H 0.96698 * 117.00175 * 180.02562 * 18 16 15 28 28 H 1.08008 * 126.96023 * 179.81061 * 19 15 14 29 29 H 1.08004 * 120.14143 * 359.94567 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6782 -4.1689 -1.2045 12 6 3.5732 -5.2164 -1.2278 13 6 4.0365 -5.7575 -0.0339 14 8 4.8872 -6.7611 0.2556 15 6 5.0204 -6.9085 1.5904 16 6 5.8725 -7.9057 2.2497 17 8 5.9186 -7.9589 3.4634 18 8 6.6041 -8.7629 1.5090 19 6 4.2426 -5.9974 2.2321 20 6 3.5793 -5.2221 1.1848 21 6 2.6713 -4.1602 1.1864 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 2.3210 -3.7511 -2.1342 26 1 3.9139 -5.6162 -2.1715 27 1 7.1495 -9.4019 1.9878 28 1 4.1362 -5.8713 3.2995 29 1 2.3201 -3.7482 2.1209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214805.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:16 Heat of formation + Delta-G solvation = -88.750114 kcal Electronic energy + Delta-G solvation = -16387.497554 eV Core-core repulsion = 13434.010252 eV Total energy + Delta-G solvation = -2953.487302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.57708 -41.11624 -39.23715 -37.32874 -35.29896 -33.95161 -32.76929 -30.87941 -28.99028 -26.27837 -25.16759 -23.02717 -22.39059 -21.97301 -19.55972 -18.68720 -18.48504 -18.37559 -17.66552 -16.79874 -16.33716 -15.91052 -15.85376 -15.00798 -14.69896 -14.48493 -14.23463 -14.09432 -13.60871 -13.24512 -12.96169 -12.77845 -12.57570 -12.48374 -12.23118 -11.98430 -11.54012 -11.51134 -11.34111 -10.58410 -9.49219 -9.28210 -8.18985 -6.31558 -0.66082 0.39670 0.65696 1.17511 1.42664 1.43942 1.52225 1.70541 2.05059 2.40258 2.76096 3.12727 3.53073 3.61361 3.87171 4.06242 4.19114 4.38734 4.45756 4.58664 4.78679 5.03093 5.18512 5.24574 5.29886 5.35608 5.36555 5.57237 5.75565 5.94111 6.02106 6.19264 6.78154 6.80930 7.37151 8.89883 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.041299 B = 0.004572 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.814252 B = 6122.946747 C = 6346.544381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.059 3.941 10 C -0.075 4.075 11 C -0.073 4.073 12 C -0.106 4.106 13 C 0.049 3.951 14 O -0.180 6.180 15 C -0.040 4.040 16 C 0.585 3.415 17 O -0.512 6.512 18 O -0.495 6.495 19 C -0.085 4.085 20 C -0.160 4.160 21 C -0.073 4.073 22 H 0.265 0.735 23 H 0.014 0.986 24 H 0.007 0.993 25 H 0.148 0.852 26 H 0.165 0.835 27 H 0.443 0.557 28 H 0.189 0.811 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 -14.546 0.814 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.075 4.075 11 C -0.090 4.090 12 C -0.124 4.124 13 C 0.001 3.999 14 O -0.082 6.082 15 C -0.088 4.088 16 C 0.429 3.571 17 O -0.403 6.403 18 O -0.309 6.309 19 C -0.105 4.105 20 C -0.161 4.161 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.166 0.834 26 H 0.182 0.818 27 H 0.306 0.694 28 H 0.206 0.794 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.426 -14.362 0.729 17.762 hybrid contribution 0.280 0.743 0.516 0.947 sum 10.706 -13.619 1.245 17.368 Atomic orbital electron populations 1.70055 1.07541 1.27990 1.51149 1.25854 0.95700 1.02888 0.94662 0.85563 0.78330 0.78456 0.79094 1.19192 1.20768 1.19591 1.21357 0.93141 0.91197 1.51092 0.92630 1.18099 0.92658 0.90386 0.96668 1.20099 0.98132 0.96101 0.93172 1.21197 0.95189 0.94031 0.98628 1.20183 0.99348 0.97587 0.95278 1.19950 0.93643 0.89990 0.96341 1.84020 1.54958 1.46230 1.22993 1.20646 1.04903 1.01802 0.81405 1.18637 0.76584 0.78259 0.83622 1.90999 1.64410 1.70564 1.14351 1.84631 1.56408 1.45919 1.43983 1.23030 0.93985 0.92553 1.00916 1.19975 1.02649 1.00473 0.92959 1.20270 0.95840 0.94106 0.98875 0.92578 0.96726 0.97434 0.83413 0.81777 0.69364 0.79353 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 13.29 21.45 0.28 -53.82 15 2 C 0.01 0.42 5.46 84.66 0.46 0.88 15 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 15 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.53 -28.88 9.09 25.60 0.23 -28.65 15 8 H 0.06 2.98 7.74 -2.92 -0.02 2.96 15 9 C 0.06 2.95 5.09 29.10 0.15 3.10 15 10 C -0.07 -3.07 5.04 -20.10 -0.10 -3.17 15 11 C -0.07 -2.50 9.66 22.31 0.22 -2.29 15 12 C -0.11 -3.14 10.07 22.35 0.23 -2.92 15 13 C 0.05 1.56 7.41 23.07 0.17 1.73 15 14 O -0.18 -5.39 10.60 -12.32 -0.13 -5.52 15 15 C -0.04 -1.10 7.10 23.97 0.17 -0.93 15 16 C 0.58 13.39 8.31 70.06 0.58 13.98 15 17 O -0.51 -13.39 17.61 19.60 0.35 -13.04 15 18 O -0.49 -7.95 13.44 -55.99 -0.75 -8.71 15 19 C -0.09 -2.43 10.81 23.80 0.26 -2.17 15 20 C -0.16 -5.38 6.38 -20.24 -0.13 -5.51 15 21 C -0.07 -2.75 9.68 22.25 0.22 -2.54 15 22 H 0.27 14.62 8.31 -92.71 -0.77 13.85 15 23 H 0.01 0.76 8.08 -2.38 -0.02 0.74 15 24 H 0.01 0.40 8.08 -2.38 -0.02 0.38 15 25 H 0.15 4.69 8.06 -2.91 -0.02 4.67 15 26 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 27 H 0.44 1.96 9.11 -74.06 -0.67 1.28 15 28 H 0.19 4.46 8.06 -2.91 -0.02 4.44 15 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -66.20 273.45 4.74 -61.45 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.52 Total: 3.05 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.45 Total: -28.49 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.28 Total: -53.82 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.54 Total: -27.27 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.20 4.74 -61.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214805.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.296 kcal (2) G-P(sol) polarization free energy of solvation -66.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds