Wall clock time and date at job start Mon Mar 30 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46798 * 2 1 4 4 C 1.50697 * 109.46918 * 120.00341 * 2 1 3 5 5 H 1.08000 * 119.99592 * 120.00277 * 4 2 1 6 6 C 1.37872 * 120.00318 * 299.99830 * 4 2 1 7 7 N 1.31516 * 119.99714 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00347 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47067 * 89.99648 * 8 6 4 10 10 H 1.48496 * 109.47053 * 209.99999 * 8 6 4 11 11 H 1.48499 * 109.46922 * 329.99920 * 8 6 4 12 12 C 1.50702 * 109.47103 * 240.00448 * 2 1 3 13 13 C 1.38239 * 119.98089 * 299.98038 * 12 2 1 14 14 C 1.38191 * 120.07163 * 180.02562 * 13 12 2 15 15 C 1.38476 * 120.03455 * 359.78506 * 14 13 12 16 16 F 1.35106 * 120.02041 * 180.24716 * 15 14 13 17 17 C 1.38493 * 119.96524 * 0.46927 * 15 14 13 18 18 Cl 1.73599 * 120.04010 * 179.79221 * 17 15 14 19 19 C 1.38427 * 119.98216 * 119.99715 * 12 2 1 20 20 F 1.35098 * 120.01819 * 0.02562 * 19 12 2 21 21 H 1.08994 * 109.47136 * 299.99833 * 1 2 3 22 22 H 1.09007 * 109.47063 * 59.99454 * 1 2 3 23 23 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 24 24 H 0.97005 * 120.00089 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.96827 * 0.02562 * 13 12 2 26 26 H 1.08002 * 119.99024 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.6305 -0.5444 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 6 2.0324 -0.7103 -1.2305 13 6 1.6985 -2.0339 -1.4488 14 6 2.1586 -2.6872 -2.5763 15 6 2.9513 -2.0154 -3.4916 16 9 3.3967 -2.6530 -4.5963 17 6 3.2910 -0.6910 -3.2718 18 17 4.2891 0.1515 -4.4153 19 6 2.8281 -0.0371 -2.1415 20 9 3.1549 1.2561 -1.9273 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7088 1.1611 3.4844 25 1 1.0775 -2.5580 -0.7374 26 1 1.8966 -3.7212 -2.7457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260222507.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:00 Heat of formation + Delta-G solvation = -84.210187 kcal Electronic energy + Delta-G solvation = -15468.340501 eV Core-core repulsion = 12401.529699 eV Total energy + Delta-G solvation = -3066.810802 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.79193 -48.49548 -38.73113 -36.49750 -34.41681 -31.48878 -30.27459 -28.17873 -25.27079 -23.25990 -22.61119 -20.11304 -17.92767 -17.18809 -16.38194 -15.80138 -15.58811 -15.26073 -14.93097 -14.60989 -14.06556 -13.85126 -12.89695 -12.43053 -12.36251 -12.04025 -11.83413 -11.42976 -11.28959 -11.03335 -10.91625 -10.74455 -10.40233 -10.24766 -9.73561 -9.19112 -8.52748 -8.49646 -8.06070 -6.13373 -4.22120 1.17284 1.31577 2.10986 3.23869 3.31119 3.33045 3.69062 4.04722 4.33334 4.70594 4.91313 5.18502 5.22401 5.46695 5.81847 6.00300 6.26167 6.40397 6.58254 6.76783 6.83247 7.00648 7.13514 7.54647 7.74234 7.92934 8.18945 8.79453 9.43582 10.92377 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.006971 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.978635 B = 4015.793265 C = 4285.761292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 H 0.046 0.954 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C -0.060 4.060 13 C -0.053 4.053 14 C -0.155 4.155 15 C 0.105 3.895 16 F -0.132 7.132 17 C -0.115 4.115 18 Cl -0.051 7.051 19 C 0.124 3.876 20 F -0.119 7.119 21 H 0.090 0.910 22 H 0.011 0.989 23 H 0.031 0.969 24 H 0.263 0.737 25 H 0.151 0.849 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 -4.474 -9.434 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.064 0.936 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.062 4.062 13 C -0.071 4.071 14 C -0.174 4.174 15 C 0.084 3.916 16 F -0.110 7.110 17 C -0.143 4.143 18 Cl -0.022 7.022 19 C 0.104 3.896 20 F -0.097 7.097 21 H 0.109 0.891 22 H 0.030 0.970 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.168 0.832 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.631 -4.246 -9.433 10.473 hybrid contribution 0.661 -0.213 0.538 0.878 sum 2.292 -4.459 -8.896 10.211 Atomic orbital electron populations 1.21810 0.96791 0.99597 1.00818 1.17941 0.93411 0.96133 0.87342 0.93594 1.21021 1.31991 1.12753 0.89544 0.92196 1.24943 0.94793 0.94921 0.99028 1.69878 1.36077 1.22624 1.23758 0.86526 0.78692 0.80043 0.82391 1.20560 1.21113 1.19760 1.20942 0.94087 0.94707 0.96433 1.20992 0.97473 0.93332 0.95324 1.21161 1.00144 1.01204 0.94890 1.16951 0.99807 0.88797 0.86005 1.91498 1.87759 1.81284 1.50471 1.20923 1.04651 0.93401 0.95369 1.98353 1.67674 1.77356 1.58809 1.17107 0.98962 0.79923 0.93592 1.91520 1.90642 1.33155 1.94385 0.89121 0.97000 0.94940 0.92687 0.83175 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.78 37.16 0.33 -2.63 15 2 C 0.07 1.65 2.46 -92.92 -0.23 1.42 15 3 H 0.05 1.20 7.12 -51.93 -0.37 0.83 15 4 C -0.52 -13.15 8.24 -34.44 -0.28 -13.43 15 5 H 0.06 1.50 7.60 -52.49 -0.40 1.10 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 15 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 12 C -0.06 -1.21 4.74 -104.55 -0.50 -1.71 15 13 C -0.05 -0.90 8.70 -39.60 -0.34 -1.25 15 14 C -0.15 -2.29 10.02 -39.51 -0.40 -2.68 15 15 C 0.10 1.67 7.28 -39.40 -0.29 1.39 15 16 F -0.13 -2.02 16.84 2.25 0.04 -1.98 15 17 C -0.11 -2.00 6.33 -39.38 -0.25 -2.25 15 18 Cl -0.05 -0.81 28.28 -51.86 -1.47 -2.27 15 19 C 0.12 2.42 7.22 -39.40 -0.28 2.14 15 20 F -0.12 -2.44 15.76 2.25 0.04 -2.41 15 21 H 0.09 2.25 6.07 -51.93 -0.32 1.93 15 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 23 H 0.03 0.66 7.39 -51.93 -0.38 0.28 15 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 25 H 0.15 2.42 7.57 -52.49 -0.40 2.02 15 26 H 0.14 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 252.40 15.07 3.80 3.80 Total: -1.00 -26.21 252.40 -6.17 -32.37 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -1.85 Total: -3.94 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.34 Total: -17.39 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.63 Total: -23.40 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.47 Total: -2.27 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.21 -6.17 -32.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222507.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.838 kcal (2) G-P(sol) polarization free energy of solvation -26.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds