Wall clock time and date at job start Mon Mar 30 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46798 * 2 1 4 4 C 1.50697 * 109.46918 * 120.00341 * 2 1 3 5 5 H 1.08000 * 119.99592 * 120.00277 * 4 2 1 6 6 C 1.37872 * 120.00318 * 299.99830 * 4 2 1 7 7 N 1.31516 * 119.99714 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00347 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47067 * 89.99648 * 8 6 4 10 10 H 1.48496 * 109.47053 * 209.99999 * 8 6 4 11 11 H 1.48499 * 109.46922 * 329.99920 * 8 6 4 12 12 C 1.50702 * 109.47103 * 240.00448 * 2 1 3 13 13 C 1.38239 * 119.98089 * 299.98038 * 12 2 1 14 14 C 1.38191 * 120.07163 * 180.02562 * 13 12 2 15 15 C 1.38476 * 120.03455 * 359.78506 * 14 13 12 16 16 F 1.35106 * 120.02041 * 180.24716 * 15 14 13 17 17 C 1.38493 * 119.96524 * 0.46927 * 15 14 13 18 18 Cl 1.73599 * 120.04010 * 179.79221 * 17 15 14 19 19 C 1.38427 * 119.98216 * 119.99715 * 12 2 1 20 20 F 1.35098 * 120.01819 * 0.02562 * 19 12 2 21 21 H 1.08994 * 109.47136 * 299.99833 * 1 2 3 22 22 H 1.09007 * 109.47063 * 59.99454 * 1 2 3 23 23 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 24 24 H 0.97005 * 120.00089 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.96827 * 0.02562 * 13 12 2 26 26 H 1.08002 * 119.99024 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.6305 -0.5444 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7120 12 6 2.0324 -0.7103 -1.2305 13 6 1.6985 -2.0339 -1.4488 14 6 2.1586 -2.6872 -2.5763 15 6 2.9513 -2.0154 -3.4916 16 9 3.3967 -2.6530 -4.5963 17 6 3.2910 -0.6910 -3.2718 18 17 4.2891 0.1515 -4.4153 19 6 2.8281 -0.0371 -2.1415 20 9 3.1549 1.2561 -1.9273 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7088 1.1611 3.4844 25 1 1.0775 -2.5580 -0.7374 26 1 1.8966 -3.7212 -2.7457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222507.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:00 Heat of formation + Delta-G solvation = -96.467789 kcal Electronic energy + Delta-G solvation = -15468.872030 eV Core-core repulsion = 12401.529699 eV Total energy + Delta-G solvation = -3067.342331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.06528 -50.00716 -40.13957 -37.83276 -36.17008 -33.29126 -31.61872 -29.75242 -27.21577 -24.75695 -24.01341 -21.78010 -19.29834 -18.73130 -18.07149 -17.19325 -17.14620 -16.77214 -16.35714 -16.23864 -15.50178 -15.24351 -14.70115 -13.87753 -13.74544 -13.64101 -13.48824 -13.00270 -12.85490 -12.81630 -12.37781 -12.24356 -12.12503 -12.03261 -11.46638 -11.04454 -10.47598 -9.86914 -9.52578 -8.10191 -6.25242 -0.18638 -0.04987 0.78235 1.45310 1.47442 1.56333 2.29915 2.47265 2.69139 3.18680 3.35378 3.62646 3.82419 4.13849 4.45762 4.59017 4.86218 4.89290 5.03092 5.14484 5.17703 5.29684 5.60696 5.66964 5.86941 6.04550 6.27078 6.82999 7.43595 8.94784 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.006971 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.978635 B = 4015.793265 C = 4285.761292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.070 3.930 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.283 1.283 10 H -0.284 1.284 11 H -0.260 1.260 12 C -0.083 4.083 13 C -0.050 4.050 14 C -0.129 4.129 15 C 0.112 3.888 16 F -0.123 7.123 17 C -0.119 4.119 18 Cl -0.041 7.041 19 C 0.103 3.897 20 F -0.135 7.135 21 H 0.061 0.939 22 H 0.023 0.977 23 H 0.048 0.952 24 H 0.262 0.738 25 H 0.162 0.838 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -6.798 -10.228 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 H 0.023 0.977 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.210 1.210 11 H -0.184 1.184 12 C -0.084 4.084 13 C -0.068 4.068 14 C -0.147 4.147 15 C 0.092 3.908 16 F -0.102 7.102 17 C -0.148 4.148 18 Cl -0.012 7.012 19 C 0.083 3.917 20 F -0.113 7.113 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.179 0.821 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.837 -6.580 -10.243 12.312 hybrid contribution 0.631 0.501 0.680 1.054 sum 2.468 -6.079 -9.563 11.597 Atomic orbital electron populations 1.21655 0.96141 1.00342 0.99962 1.17731 0.94044 0.94244 0.88823 0.97661 1.21343 1.31574 1.12740 0.90487 0.91934 1.25705 0.95079 0.95594 1.01858 1.70019 1.37313 1.23993 1.24170 0.85585 0.77735 0.79519 0.79028 1.20908 1.21006 1.18443 1.20692 0.95872 0.96125 0.95747 1.21102 0.97381 0.91970 0.96333 1.21495 0.97757 1.02666 0.92807 1.17058 0.99314 0.88180 0.86256 1.91529 1.87605 1.80933 1.50087 1.20973 1.04707 0.94080 0.95001 1.98355 1.67298 1.77391 1.58118 1.17241 1.00099 0.79614 0.94722 1.91471 1.90947 1.34280 1.94630 0.91987 0.95755 0.93253 0.92855 0.82073 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.78 71.98 0.63 -4.91 15 2 C 0.07 3.36 2.46 -12.28 -0.03 3.33 15 3 H 0.01 0.29 7.12 -2.39 -0.02 0.27 15 4 C -0.52 -26.79 8.24 25.60 0.21 -26.58 15 5 H 0.06 3.09 7.60 -2.91 -0.02 3.07 15 6 C 0.02 0.88 5.30 84.65 0.45 1.33 15 7 N -0.92 -50.83 11.32 21.45 0.24 -50.59 15 8 Si 0.96 41.38 29.54 68.60 2.03 43.41 15 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 12 C -0.08 -3.29 4.74 -19.82 -0.09 -3.39 15 13 C -0.05 -1.56 8.70 22.26 0.19 -1.37 15 14 C -0.13 -3.26 10.02 22.32 0.22 -3.04 15 15 C 0.11 3.23 7.28 22.39 0.16 3.39 15 16 F -0.12 -3.32 16.84 44.97 0.76 -2.56 15 17 C -0.12 -3.96 6.33 22.40 0.14 -3.82 15 18 Cl -0.04 -1.24 28.28 -2.72 -0.08 -1.31 15 19 C 0.10 4.01 7.22 22.39 0.16 4.17 15 20 F -0.13 -5.72 15.76 44.97 0.71 -5.01 15 21 H 0.06 3.14 6.07 -2.39 -0.01 3.13 15 22 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 23 H 0.05 1.98 7.39 -2.39 -0.02 1.97 15 24 H 0.26 13.90 8.31 -92.70 -0.77 13.13 15 25 H 0.16 4.70 7.57 -2.91 -0.02 4.68 15 26 H 0.19 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -56.57 252.40 6.92 -49.65 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: 1.21 Total: -2.70 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.05 Total: -30.88 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.24 Total: -50.59 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.47 Total: -7.57 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -56.57 6.92 -49.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222507.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.820 kcal (2) G-P(sol) polarization free energy of solvation -56.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds