Wall clock time and date at job start Mon Mar 30 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.38234 * 119.98361 * 59.71851 * 12 2 1 14 14 C 1.38198 * 120.06914 * 179.72905 * 13 12 2 15 15 C 1.38470 * 120.03425 * 0.54729 * 14 13 12 16 16 F 1.35102 * 120.01705 * 179.70311 * 15 14 13 17 17 C 1.38492 * 119.96580 * 359.72989 * 15 14 13 18 18 Cl 1.73594 * 120.03564 * 179.97438 * 17 15 14 19 19 C 1.38428 * 119.97805 * 240.00165 * 12 2 1 20 20 F 1.35093 * 120.01985 * 0.02562 * 19 12 2 21 21 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.96242 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.97911 * 180.25558 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 1.6935 -2.0324 1.4515 14 6 2.1578 -2.6874 2.5763 15 6 2.9541 -2.0171 3.4895 16 9 3.4028 -2.6561 4.5920 17 6 3.2898 -0.6912 3.2723 18 17 4.2875 0.1511 4.4163 19 6 2.8282 -0.0376 2.1414 20 9 3.1541 1.2560 1.9281 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9030 -0.5275 -4.4376 25 1 1.0691 -2.5551 0.7420 26 1 1.8954 -3.7214 2.7455 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260222511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:02 Heat of formation + Delta-G solvation = -75.506519 kcal Electronic energy + Delta-G solvation = -15521.347364 eV Core-core repulsion = 12454.913982 eV Total energy + Delta-G solvation = -3066.433382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.85869 -48.62796 -38.86322 -36.58174 -34.57923 -31.79578 -30.36588 -28.78862 -25.22236 -23.39672 -22.77669 -20.15751 -18.03213 -17.39148 -16.49631 -15.90926 -15.88299 -15.36585 -15.05052 -14.68646 -14.17763 -13.97275 -13.03339 -12.53084 -12.49244 -12.46997 -12.28332 -11.83131 -11.53925 -11.21859 -10.96759 -10.84306 -10.40820 -10.13933 -9.57093 -9.32160 -8.70597 -8.60640 -8.18486 -6.20662 -4.22903 1.08761 1.21486 2.03755 3.18758 3.31747 3.32956 3.58775 3.95864 4.29553 4.60451 4.82329 5.08821 5.12616 5.34565 5.70630 5.81380 6.08716 6.18132 6.26615 6.39743 6.45969 6.54878 6.82506 6.95979 7.25118 7.52724 8.32578 8.80302 9.38990 10.91529 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035055 B = 0.007377 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.548875 B = 3794.623733 C = 4165.014612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.037 3.963 3 H 0.046 0.954 4 C -0.517 4.517 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.265 1.265 12 C -0.056 4.056 13 C -0.048 4.048 14 C -0.153 4.153 15 C 0.110 3.890 16 F -0.130 7.130 17 C -0.115 4.115 18 Cl -0.048 7.048 19 C 0.126 3.874 20 F -0.120 7.120 21 H 0.033 0.967 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.267 0.733 25 H 0.153 0.847 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -0.877 12.474 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.064 0.936 4 C -0.554 4.554 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.190 1.190 12 C -0.057 4.057 13 C -0.066 4.066 14 C -0.172 4.172 15 C 0.090 3.910 16 F -0.108 7.108 17 C -0.144 4.144 18 Cl -0.019 7.019 19 C 0.106 3.894 20 F -0.098 7.098 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.171 0.829 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.977 -0.776 12.409 12.471 hybrid contribution -0.222 0.970 0.020 0.995 sum -1.199 0.194 12.429 12.488 Atomic orbital electron populations 1.22180 0.97571 1.01267 0.99204 1.18359 0.92523 0.96807 0.90445 0.93616 1.20844 1.32943 1.13869 0.87754 0.90304 1.24951 0.95540 0.96545 0.95674 1.69869 1.44967 1.40139 0.98038 0.86876 0.80546 0.83757 0.77299 1.20353 1.22261 1.18950 1.20435 0.94961 0.94753 0.95591 1.21006 0.97342 0.93047 0.95194 1.21176 0.99906 1.01316 0.94833 1.16972 0.99363 0.88673 0.86010 1.91507 1.87585 1.81182 1.50552 1.20884 1.04694 0.93404 0.95399 1.98359 1.67635 1.77298 1.58640 1.17053 0.98952 0.79849 0.93548 1.91514 1.90709 1.33145 1.94409 0.94819 0.93521 0.92372 0.92349 0.82889 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.48 37.16 0.32 -2.55 15 2 C 0.04 0.83 2.05 -92.92 -0.19 0.64 15 3 H 0.05 1.07 6.18 -51.93 -0.32 0.75 15 4 C -0.52 -13.47 8.83 -34.44 -0.30 -13.77 15 5 H 0.08 2.22 7.85 -52.49 -0.41 1.80 15 6 C 0.08 2.06 5.45 -17.82 -0.10 1.97 15 7 N -0.89 -26.01 13.96 55.43 0.77 -25.24 15 8 Si 0.89 20.88 24.37 -169.99 -4.14 16.74 15 9 H -0.28 -6.28 6.87 56.52 0.39 -5.89 15 10 H -0.30 -7.05 7.11 56.52 0.40 -6.65 15 11 H -0.26 -6.04 6.53 56.52 0.37 -5.67 15 12 C -0.06 -1.07 4.74 -104.55 -0.50 -1.57 15 13 C -0.05 -0.78 8.71 -39.60 -0.35 -1.13 15 14 C -0.15 -2.18 10.02 -39.51 -0.40 -2.57 15 15 C 0.11 1.70 7.27 -39.40 -0.29 1.41 15 16 F -0.13 -1.92 16.84 2.25 0.04 -1.89 15 17 C -0.12 -1.93 6.33 -39.38 -0.25 -2.18 15 18 Cl -0.05 -0.74 28.28 -51.86 -1.47 -2.21 15 19 C 0.13 2.34 7.22 -39.40 -0.28 2.06 15 20 F -0.12 -2.32 15.76 2.25 0.04 -2.28 15 21 H 0.03 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.05 0.98 3.27 -51.93 -0.17 0.81 15 23 H 0.06 1.06 7.37 -51.93 -0.38 0.67 15 24 H 0.27 7.30 8.31 -40.82 -0.34 6.97 15 25 H 0.15 2.38 7.56 -52.49 -0.40 1.99 15 26 H 0.15 1.60 8.06 -52.48 -0.42 1.18 15 LS Contribution 245.57 15.07 3.70 3.70 Total: -1.00 -27.67 245.57 -5.10 -32.77 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -1.71 Total: -3.88 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.33 Total: -17.71 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.77 Total: -25.24 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.14 Total: 16.74 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.47 Total: -2.21 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.67 -5.10 -32.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.736 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds