Wall clock time and date at job start Mon Mar 30 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.38234 * 119.98361 * 59.71851 * 12 2 1 14 14 C 1.38198 * 120.06914 * 179.72905 * 13 12 2 15 15 C 1.38470 * 120.03425 * 0.54729 * 14 13 12 16 16 F 1.35102 * 120.01705 * 179.70311 * 15 14 13 17 17 C 1.38492 * 119.96580 * 359.72989 * 15 14 13 18 18 Cl 1.73594 * 120.03564 * 179.97438 * 17 15 14 19 19 C 1.38428 * 119.97805 * 240.00165 * 12 2 1 20 20 F 1.35093 * 120.01985 * 0.02562 * 19 12 2 21 21 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.96242 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.97911 * 180.25558 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 1.6935 -2.0324 1.4515 14 6 2.1578 -2.6874 2.5763 15 6 2.9541 -2.0171 3.4895 16 9 3.4028 -2.6561 4.5920 17 6 3.2898 -0.6912 3.2723 18 17 4.2875 0.1511 4.4163 19 6 2.8282 -0.0376 2.1414 20 9 3.1541 1.2560 1.9281 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9030 -0.5275 -4.4376 25 1 1.0691 -2.5551 0.7420 26 1 1.8954 -3.7214 2.7455 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:02 Heat of formation + Delta-G solvation = -90.669562 kcal Electronic energy + Delta-G solvation = -15522.004883 eV Core-core repulsion = 12454.913982 eV Total energy + Delta-G solvation = -3067.090901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.10079 -50.04606 -40.21714 -37.86595 -36.25520 -33.71856 -31.65597 -30.24103 -27.10022 -24.86365 -24.11487 -21.76460 -19.37033 -18.98277 -18.16734 -17.41007 -17.19417 -16.81762 -16.40958 -16.28268 -15.59106 -15.31925 -14.90122 -14.14242 -13.95698 -13.85149 -13.76260 -13.36094 -12.95972 -12.86060 -12.36723 -12.25149 -12.07125 -11.86612 -11.32355 -11.20681 -10.74344 -9.89562 -9.58119 -8.29573 -6.34508 -0.21803 -0.09880 0.76347 1.32053 1.40162 1.48353 2.26798 2.33110 2.65514 3.06121 3.30459 3.55022 3.74510 4.05543 4.28536 4.55028 4.62516 4.66238 4.85342 4.96245 5.01168 5.07124 5.30816 5.56190 5.62150 5.65837 6.25954 6.71069 7.30726 8.85982 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035055 B = 0.007377 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.548875 B = 3794.623733 C = 4165.014612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 H 0.030 0.970 4 C -0.510 4.510 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.941 3.059 9 H -0.258 1.258 10 H -0.302 1.302 11 H -0.254 1.254 12 C -0.079 4.079 13 C -0.047 4.047 14 C -0.130 4.130 15 C 0.116 3.884 16 F -0.123 7.123 17 C -0.120 4.120 18 Cl -0.038 7.038 19 C 0.110 3.890 20 F -0.131 7.131 21 H 0.060 0.940 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.267 0.733 25 H 0.161 0.839 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -1.250 14.203 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.048 0.952 4 C -0.548 4.548 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.582 5.582 8 Si 0.768 3.232 9 H -0.184 1.184 10 H -0.231 1.231 11 H -0.178 1.178 12 C -0.081 4.081 13 C -0.065 4.065 14 C -0.149 4.149 15 C 0.096 3.904 16 F -0.101 7.101 17 C -0.149 4.149 18 Cl -0.009 7.009 19 C 0.089 3.911 20 F -0.110 7.110 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.178 0.822 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.035 -1.148 14.171 14.362 hybrid contribution 0.202 0.993 -0.408 1.092 sum -1.832 -0.156 13.763 13.885 Atomic orbital electron populations 1.22107 0.95483 1.02483 0.99913 1.18204 0.94260 0.95624 0.90061 0.95226 1.21084 1.31456 1.12721 0.89538 0.93554 1.25721 0.97090 0.99432 0.95439 1.70007 1.47298 1.42269 0.98627 0.85973 0.79759 0.80404 0.77055 1.18407 1.23050 1.17820 1.20277 0.96643 0.96002 0.95149 1.21112 0.97367 0.92008 0.96054 1.21487 0.97781 1.02676 0.92954 1.17071 0.98935 0.88175 0.86222 1.91534 1.87450 1.80890 1.50219 1.20948 1.04743 0.94014 0.95160 1.98361 1.67279 1.77281 1.58001 1.17141 0.99781 0.79668 0.94471 1.91477 1.90949 1.33930 1.94600 0.92107 0.94631 0.91016 0.92419 0.82190 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 8.48 71.98 0.61 -4.73 15 2 C 0.04 1.62 2.05 -12.28 -0.03 1.60 15 3 H 0.03 1.37 6.18 -2.39 -0.01 1.36 15 4 C -0.51 -26.92 8.83 25.60 0.23 -26.69 15 5 H 0.05 2.68 7.85 -2.92 -0.02 2.66 15 6 C 0.02 1.17 5.45 84.65 0.46 1.63 15 7 N -0.94 -56.22 13.96 21.45 0.30 -55.93 15 8 Si 0.94 42.91 24.37 68.60 1.67 44.58 15 9 H -0.26 -10.94 6.87 99.48 0.68 -10.26 15 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 15 11 H -0.25 -11.02 6.53 99.48 0.65 -10.37 15 12 C -0.08 -2.95 4.74 -19.82 -0.09 -3.05 15 13 C -0.05 -1.45 8.71 22.26 0.19 -1.25 15 14 C -0.13 -3.24 10.02 22.32 0.22 -3.02 15 15 C 0.12 3.24 7.27 22.39 0.16 3.40 15 16 F -0.12 -3.23 16.84 44.97 0.76 -2.47 15 17 C -0.12 -3.80 6.33 22.40 0.14 -3.66 15 18 Cl -0.04 -1.11 28.28 -2.72 -0.08 -1.19 15 19 C 0.11 3.96 7.22 22.39 0.16 4.13 15 20 F -0.13 -5.06 15.76 44.97 0.71 -4.35 15 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.04 1.40 3.27 -2.39 -0.01 1.39 15 23 H 0.07 2.44 7.37 -2.39 -0.02 2.42 15 24 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 25 H 0.16 4.63 7.56 -2.91 -0.02 4.61 15 26 H 0.19 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -59.82 245.57 6.56 -53.26 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 1.14 Total: -2.27 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 2.06 Total: -31.64 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.47 Total: -6.82 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.67 Total: 44.58 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -59.82 6.56 -53.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.409 kcal (2) G-P(sol) polarization free energy of solvation -59.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds