Wall clock time and date at job start Mon Mar 30 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99650 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99691 * 3 2 1 5 5 H 1.48499 * 109.47472 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99814 * 3 2 1 7 7 C 1.37872 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47122 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.38225 * 119.98973 * 99.99925 * 11 10 9 13 13 C 1.38431 * 120.02177 * 179.97438 * 12 11 10 14 14 F 1.35105 * 119.99546 * 179.97438 * 13 12 11 15 15 C 1.38459 * 120.00896 * 0.02562 * 13 12 11 16 16 C 1.38265 * 119.98956 * 359.96711 * 15 13 12 17 17 Cl 1.73597 * 120.01377 * 180.02562 * 16 15 13 18 18 C 1.38392 * 119.99709 * 279.97396 * 11 10 9 19 19 F 1.35104 * 120.00151 * 0.02892 * 18 11 10 20 20 H 0.97002 * 120.00386 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47300 * 59.99791 * 9 7 2 22 22 H 1.09009 * 109.46960 * 299.99224 * 9 7 2 23 23 H 1.08997 * 109.47179 * 59.99747 * 10 9 7 24 24 H 1.08996 * 109.46787 * 299.99661 * 10 9 7 25 25 H 1.07999 * 119.99436 * 359.72529 * 12 11 10 26 26 H 1.08000 * 120.00652 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.3260 -5.6698 -1.1776 13 6 0.6344 -6.8690 -1.1777 14 9 0.4722 -7.5550 -2.3302 15 6 0.1080 -7.3648 0.0031 16 6 0.2738 -6.6624 1.1824 17 17 -0.3854 -7.2839 2.6632 18 6 0.9665 -5.4622 1.1819 19 9 1.1287 -4.7752 2.3339 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8895 25 1 1.7326 -5.2812 -2.0995 26 1 -0.4312 -8.3006 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260223385.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:17 Heat of formation + Delta-G solvation = -91.169080 kcal Electronic energy + Delta-G solvation = -15031.630996 eV Core-core repulsion = 11964.518435 eV Total energy + Delta-G solvation = -3067.112562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.95780 -48.66485 -38.99513 -36.67363 -34.19675 -32.25253 -30.08993 -29.11364 -25.42189 -22.95409 -22.45185 -20.55196 -17.59813 -17.33392 -17.16227 -16.34410 -15.82756 -15.22670 -14.95959 -14.50851 -14.19454 -13.80732 -13.15829 -12.96070 -12.80054 -12.52699 -12.25430 -11.63257 -11.37509 -11.16220 -10.94326 -10.82742 -10.63259 -10.00868 -9.77645 -9.22675 -8.76374 -8.41123 -8.38319 -6.04855 -4.08779 0.86369 0.98994 1.88250 3.29987 3.31154 3.35925 3.38216 4.14255 4.16875 4.41563 4.66430 4.85705 5.03506 5.31109 5.37896 5.71747 5.84039 5.92285 6.07131 6.39707 6.46220 6.64891 6.87692 7.56802 7.66983 7.92032 8.31058 8.96856 9.55684 11.06244 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.005980 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.878736 B = 4681.018260 C = 5336.086875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.051 4.051 12 C -0.124 4.124 13 C 0.101 3.899 14 F -0.133 7.133 15 C -0.139 4.139 16 C -0.047 4.047 17 Cl -0.047 7.047 18 C 0.103 3.897 19 F -0.115 7.115 20 H 0.262 0.738 21 H 0.020 0.980 22 H 0.021 0.979 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.151 0.849 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -14.733 0.312 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.118 4.118 11 C -0.052 4.052 12 C -0.142 4.142 13 C 0.082 3.918 14 F -0.112 7.112 15 C -0.158 4.158 16 C -0.075 4.075 17 Cl -0.018 7.018 18 C 0.083 3.917 19 F -0.093 7.093 20 H 0.072 0.928 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.169 0.831 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.672 -14.665 0.454 14.687 hybrid contribution 0.225 0.826 0.133 0.867 sum 0.897 -13.839 0.587 13.880 Atomic orbital electron populations 1.69955 1.06091 1.26905 1.50213 1.25009 0.94851 0.99300 0.95098 0.86624 0.79563 0.82959 0.78665 1.20186 1.21250 1.20151 1.21126 0.93033 0.90672 1.51453 0.92464 1.19106 0.93576 0.90270 0.97869 1.20932 0.98663 0.89528 1.02687 1.20327 0.97061 0.97755 0.90041 1.21099 1.00246 0.93342 0.99552 1.17379 1.00698 0.92149 0.81600 1.91515 1.93904 1.78813 1.46951 1.20664 1.03599 1.01999 0.89546 1.20602 1.02315 0.95314 0.89241 1.98380 1.84274 1.86548 1.32591 1.17275 1.00750 0.90360 0.83341 1.91570 1.93331 1.78276 1.46143 0.92803 0.96202 0.96034 0.90927 0.90883 0.83133 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.72 4.95 -27.88 -0.14 0.58 15 10 C -0.08 -1.58 5.01 -27.88 -0.14 -1.72 15 11 C -0.05 -0.86 5.14 -104.57 -0.54 -1.40 15 12 C -0.12 -1.81 9.65 -39.52 -0.38 -2.19 15 13 C 0.10 1.38 7.30 -39.43 -0.29 1.09 15 14 F -0.13 -1.75 17.27 2.25 0.04 -1.71 15 15 C -0.14 -1.78 9.81 -39.49 -0.39 -2.17 15 16 C -0.05 -0.68 6.32 -39.45 -0.25 -0.93 15 17 Cl -0.05 -0.62 28.62 -51.86 -1.48 -2.11 15 18 C 0.10 1.75 7.21 -39.40 -0.28 1.47 15 19 F -0.12 -2.15 16.23 2.25 0.04 -2.12 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.02 0.58 8.14 -51.92 -0.42 0.16 15 23 H 0.07 1.41 7.94 -51.93 -0.41 1.00 15 24 H 0.07 1.31 8.00 -51.93 -0.42 0.89 15 25 H 0.15 1.96 8.04 -52.49 -0.42 1.54 15 26 H 0.15 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -28.92 260.59 -6.64 -35.56 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -2.06 Total: -5.56 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.82 Total: -18.46 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.92 -6.64 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260223385.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.612 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds