Wall clock time and date at job start Mon Mar 30 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99650 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99691 * 3 2 1 5 5 H 1.48499 * 109.47472 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99814 * 3 2 1 7 7 C 1.37872 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47122 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.38225 * 119.98973 * 99.99925 * 11 10 9 13 13 C 1.38431 * 120.02177 * 179.97438 * 12 11 10 14 14 F 1.35105 * 119.99546 * 179.97438 * 13 12 11 15 15 C 1.38459 * 120.00896 * 0.02562 * 13 12 11 16 16 C 1.38265 * 119.98956 * 359.96711 * 15 13 12 17 17 Cl 1.73597 * 120.01377 * 180.02562 * 16 15 13 18 18 C 1.38392 * 119.99709 * 279.97396 * 11 10 9 19 19 F 1.35104 * 120.00151 * 0.02892 * 18 11 10 20 20 H 0.97002 * 120.00386 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47300 * 59.99791 * 9 7 2 22 22 H 1.09009 * 109.46960 * 299.99224 * 9 7 2 23 23 H 1.08997 * 109.47179 * 59.99747 * 10 9 7 24 24 H 1.08996 * 109.46787 * 299.99661 * 10 9 7 25 25 H 1.07999 * 119.99436 * 359.72529 * 12 11 10 26 26 H 1.08000 * 120.00652 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.3260 -5.6698 -1.1776 13 6 0.6344 -6.8690 -1.1777 14 9 0.4722 -7.5550 -2.3302 15 6 0.1080 -7.3648 0.0031 16 6 0.2738 -6.6624 1.1824 17 17 -0.3854 -7.2839 2.6632 18 6 0.9665 -5.4622 1.1819 19 9 1.1287 -4.7752 2.3339 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8895 25 1 1.7326 -5.2812 -2.0995 26 1 -0.4312 -8.3006 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260223385.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:17 Heat of formation + Delta-G solvation = -105.843719 kcal Electronic energy + Delta-G solvation = -15032.267337 eV Core-core repulsion = 11964.518435 eV Total energy + Delta-G solvation = -3067.748902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.04032 -50.02941 -40.20496 -37.80865 -35.96184 -34.04385 -31.36899 -30.66065 -27.20849 -24.29609 -23.94585 -22.13611 -18.89282 -18.60157 -18.54167 -18.14671 -17.07933 -16.52721 -16.42158 -16.09591 -15.42175 -15.08614 -14.79311 -14.48271 -14.17610 -13.92804 -13.79177 -13.35602 -12.84027 -12.76216 -12.38444 -12.30359 -12.12030 -11.82174 -11.59473 -11.25767 -10.55501 -10.00246 -9.64049 -8.19871 -6.31717 -0.31531 -0.19536 0.75421 1.41893 1.44727 1.52471 2.10857 2.41939 2.94991 3.01486 3.13988 3.44262 3.73236 3.87079 4.14846 4.46928 4.56066 4.70992 4.77752 4.83981 5.02154 5.07222 5.46708 5.54356 5.66051 5.81155 6.19702 6.84325 7.37895 8.91764 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.005980 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.878736 B = 4681.018260 C = 5336.086875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.067 4.067 11 C -0.071 4.071 12 C -0.118 4.118 13 C 0.109 3.891 14 F -0.126 7.126 15 C -0.119 4.119 16 C -0.049 4.049 17 Cl -0.035 7.035 18 C 0.080 3.920 19 F -0.133 7.133 20 H 0.264 0.736 21 H -0.002 1.002 22 H -0.013 1.013 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.167 0.833 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -15.696 -0.358 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.002 4.002 10 C -0.105 4.105 11 C -0.072 4.072 12 C -0.137 4.137 13 C 0.089 3.911 14 F -0.104 7.104 15 C -0.138 4.138 16 C -0.077 4.077 17 Cl -0.006 7.006 18 C 0.060 3.940 19 F -0.112 7.112 20 H 0.072 0.928 21 H 0.016 0.984 22 H 0.006 0.994 23 H 0.087 0.913 24 H 0.108 0.892 25 H 0.184 0.816 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.320 -15.647 -0.219 15.704 hybrid contribution -0.027 1.016 0.331 1.069 sum 1.293 -14.631 0.112 14.688 Atomic orbital electron populations 1.70098 1.07893 1.27884 1.51456 1.25970 0.95706 1.03381 0.94629 0.85501 0.78251 0.78029 0.79279 1.18805 1.21081 1.19294 1.21630 0.93763 0.91914 1.50841 0.91544 1.18923 0.94001 0.92241 0.95077 1.20611 0.97564 0.88975 1.03314 1.20068 0.98535 0.97417 0.91169 1.21226 0.99795 0.93501 0.99181 1.17316 1.00100 0.91662 0.82024 1.91543 1.93757 1.78511 1.46608 1.20988 1.02040 1.02434 0.88339 1.20643 1.01965 0.94672 0.90408 1.98385 1.83968 1.86170 1.32049 1.17566 1.02085 0.91455 0.82872 1.91516 1.93659 1.78915 1.47082 0.92770 0.98411 0.99412 0.91321 0.89206 0.81586 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 15 2 C 0.00 0.06 5.46 84.65 0.46 0.53 15 3 Si 0.97 43.74 29.54 68.60 2.03 45.77 15 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.54 -30.32 9.11 25.60 0.23 -30.08 15 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 15 9 C 0.03 1.80 4.95 29.85 0.15 1.94 15 10 C -0.07 -2.65 5.01 29.85 0.15 -2.51 15 11 C -0.07 -2.39 5.14 -19.83 -0.10 -2.49 15 12 C -0.12 -3.28 9.65 22.31 0.22 -3.06 15 13 C 0.11 2.66 7.30 22.37 0.16 2.82 15 14 F -0.13 -2.91 17.27 44.97 0.78 -2.13 15 15 C -0.12 -2.72 9.81 22.33 0.22 -2.50 15 16 C -0.05 -1.36 6.32 22.36 0.14 -1.22 15 17 Cl -0.03 -0.88 28.62 -2.72 -0.08 -0.95 15 18 C 0.08 2.73 7.21 22.39 0.16 2.89 15 19 F -0.13 -5.13 16.23 44.97 0.73 -4.40 15 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 21 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 15 22 H -0.01 -0.73 8.14 -2.38 -0.02 -0.74 15 23 H 0.07 2.71 7.94 -2.39 -0.02 2.69 15 24 H 0.09 3.16 8.00 -2.39 -0.02 3.14 15 25 H 0.17 4.00 8.04 -2.91 -0.02 3.97 15 26 H 0.18 2.96 8.06 -2.91 -0.02 2.94 15 Total: -1.00 -62.61 260.59 6.73 -55.87 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.20 Total: -4.02 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 1.79 Total: -33.67 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.51 Total: -6.53 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -62.61 6.73 -55.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260223385.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.972 kcal (2) G-P(sol) polarization free energy of solvation -62.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds