Wall clock time and date at job start Mon Mar 30 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 C 1.38428 * 120.01513 * 269.72239 * 11 10 9 13 13 F 1.35105 * 120.00382 * 0.02562 * 12 11 10 14 14 C 1.38450 * 119.98613 * 179.72591 * 12 11 10 15 15 C 1.38319 * 120.01565 * 0.57511 * 14 12 11 16 16 Cl 1.73599 * 119.99232 * 179.72583 * 15 14 12 17 17 C 1.38329 * 120.02330 * 359.70122 * 15 14 12 18 18 C 1.38433 * 120.00919 * 89.99881 * 11 10 9 19 19 F 1.35098 * 120.00715 * 359.95945 * 18 11 10 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08009 * 119.99179 * 180.29606 * 14 12 11 26 26 H 1.07997 * 119.99553 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 6 1.1500 -5.5699 1.1964 13 9 1.4915 -4.9880 2.3669 14 6 0.4527 -6.7660 1.1952 15 6 0.1080 -7.3648 -0.0030 16 17 -0.7600 -8.8682 -0.0037 17 6 0.4542 -6.7658 -1.2009 18 6 1.1460 -5.5665 -1.2010 19 9 1.4834 -4.9812 -2.3709 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.1819 -7.2340 2.1303 26 1 0.1844 -7.2335 -2.1362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260225612.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:27 Heat of formation + Delta-G solvation = -91.174547 kcal Electronic energy + Delta-G solvation = -15113.848708 eV Core-core repulsion = 12046.735909 eV Total energy + Delta-G solvation = -3067.112799 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.78713 -48.78368 -38.95977 -36.67384 -34.20843 -32.17643 -30.39620 -29.00207 -25.26143 -22.92956 -22.48596 -20.48443 -18.12975 -17.37670 -16.55545 -15.79477 -15.74415 -15.55577 -15.05998 -14.63404 -14.46421 -13.72122 -13.16072 -13.10620 -12.90088 -12.43927 -11.82693 -11.76118 -11.35981 -11.23230 -10.94699 -10.85525 -10.60563 -9.97828 -9.76168 -9.19135 -8.78652 -8.40470 -8.38877 -6.03310 -4.06771 0.90903 0.94532 1.82070 3.28401 3.31133 3.37209 3.40730 4.10421 4.36378 4.43098 4.73806 4.83290 4.95337 5.29598 5.32697 5.74868 5.83901 5.95005 5.98304 6.40964 6.42993 6.66584 6.91066 7.58701 7.68707 7.93869 8.33445 8.98768 9.57442 11.07945 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.005446 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.143728 B = 5139.916790 C = 5415.759061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.122 4.122 12 C 0.141 3.859 13 F -0.119 7.119 14 C -0.157 4.157 15 C 0.002 3.998 16 Cl -0.057 7.057 17 C -0.157 4.157 18 C 0.141 3.859 19 F -0.119 7.119 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -15.903 -0.005 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.119 4.119 11 C -0.124 4.124 12 C 0.121 3.879 13 F -0.097 7.097 14 C -0.176 4.176 15 C -0.025 4.025 16 Cl -0.028 7.028 17 C -0.177 4.177 18 C 0.121 3.879 19 F -0.097 7.097 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.109 -15.869 0.000 15.869 hybrid contribution 0.344 0.990 -0.011 1.048 sum 0.452 -14.879 -0.011 14.885 Atomic orbital electron populations 1.69971 1.06086 1.26747 1.50431 1.25017 0.94871 0.99318 0.95135 0.86552 0.79826 0.83250 0.78147 1.20589 1.21171 1.19799 1.21167 0.93086 0.90658 1.51158 0.92425 1.19076 0.93516 0.90295 0.97674 1.20848 0.98748 0.89497 1.02777 1.20594 1.01634 0.99596 0.90577 1.16903 0.98040 0.91677 0.81301 1.91558 1.89842 1.83567 1.44713 1.20918 1.02225 0.95837 0.98668 1.20012 0.99263 0.89814 0.93426 1.98373 1.74883 1.30630 1.98901 1.20920 1.02299 0.95764 0.98673 1.16904 0.98096 0.91600 0.81313 1.91557 1.89942 1.83419 1.44756 0.92889 0.96243 0.96244 0.90926 0.90924 0.83370 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.82 4.95 -27.88 -0.14 0.68 15 10 C -0.08 -1.69 4.93 -27.89 -0.14 -1.83 15 11 C -0.12 -2.18 5.15 -104.48 -0.54 -2.72 15 12 C 0.14 2.29 7.24 -39.43 -0.29 2.00 15 13 F -0.12 -2.06 16.47 2.25 0.04 -2.02 15 14 C -0.16 -2.09 9.81 -39.47 -0.39 -2.47 15 15 C 0.00 0.02 6.32 -39.52 -0.25 -0.23 15 16 Cl -0.06 -0.61 28.95 -51.86 -1.50 -2.11 15 17 C -0.16 -2.09 9.81 -39.47 -0.39 -2.47 15 18 C 0.14 2.29 7.24 -39.43 -0.29 2.00 15 19 F -0.12 -2.06 16.48 2.25 0.04 -2.02 15 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.02 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 15 23 H 0.07 1.47 7.64 -51.93 -0.40 1.07 15 24 H 0.07 1.47 7.63 -51.93 -0.40 1.08 15 25 H 0.15 1.62 8.06 -52.48 -0.42 1.19 15 26 H 0.15 1.62 8.06 -52.49 -0.42 1.19 15 LS Contribution 259.78 15.07 3.91 3.91 Total: -1.00 -29.52 259.78 -6.64 -36.16 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -2.03 Total: -5.78 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.82 Total: -18.58 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.52 -6.64 -36.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225612.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.017 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds