Wall clock time and date at job start Mon Mar 30 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 C 1.38428 * 120.01513 * 269.72239 * 11 10 9 13 13 F 1.35105 * 120.00382 * 0.02562 * 12 11 10 14 14 C 1.38450 * 119.98613 * 179.72591 * 12 11 10 15 15 C 1.38319 * 120.01565 * 0.57511 * 14 12 11 16 16 Cl 1.73599 * 119.99232 * 179.72583 * 15 14 12 17 17 C 1.38329 * 120.02330 * 359.70122 * 15 14 12 18 18 C 1.38433 * 120.00919 * 89.99881 * 11 10 9 19 19 F 1.35098 * 120.00715 * 359.95945 * 18 11 10 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08009 * 119.99179 * 180.29606 * 14 12 11 26 26 H 1.07997 * 119.99553 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 6 1.1500 -5.5699 1.1964 13 9 1.4915 -4.9880 2.3669 14 6 0.4527 -6.7660 1.1952 15 6 0.1080 -7.3648 -0.0030 16 17 -0.7600 -8.8682 -0.0037 17 6 0.4542 -6.7658 -1.2009 18 6 1.1460 -5.5665 -1.2010 19 9 1.4834 -4.9812 -2.3709 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.1819 -7.2340 2.1303 26 1 0.1844 -7.2335 -2.1362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225612.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:26 Heat of formation + Delta-G solvation = -106.615500 kcal Electronic energy + Delta-G solvation = -15114.518278 eV Core-core repulsion = 12046.735909 eV Total energy + Delta-G solvation = -3067.782369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.09523 -50.09092 -40.15111 -37.70423 -36.03603 -34.04602 -31.55701 -30.69277 -27.10422 -24.14949 -24.12863 -22.14558 -19.37048 -18.64670 -18.63024 -17.14711 -16.96846 -16.81506 -16.49614 -16.37847 -15.82158 -15.19737 -14.86497 -14.37571 -14.17093 -14.13868 -13.59465 -13.14640 -12.93764 -12.80630 -12.38585 -12.19356 -12.16529 -11.89539 -11.63879 -11.28798 -10.59810 -9.95274 -9.72490 -8.23299 -6.35756 -0.29692 -0.22253 0.78809 1.39351 1.41098 1.52271 2.09072 2.39354 2.87462 3.09923 3.18786 3.55984 3.58300 3.80043 4.11514 4.38855 4.64099 4.70523 4.71110 4.76862 4.90535 4.97784 5.40071 5.51911 5.57834 5.76019 6.15678 6.79172 7.33781 8.88662 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.005446 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.143728 B = 5139.916790 C = 5415.759061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.039 3.961 10 C -0.068 4.068 11 C -0.150 4.150 12 C 0.127 3.873 13 F -0.130 7.130 14 C -0.141 4.141 15 C 0.010 3.990 16 Cl -0.028 7.028 17 C -0.141 4.141 18 C 0.127 3.873 19 F -0.130 7.130 20 H 0.265 0.735 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.177 0.823 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -17.161 -0.011 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.105 4.105 11 C -0.152 4.152 12 C 0.107 3.893 13 F -0.109 7.109 14 C -0.161 4.161 15 C -0.017 4.017 16 Cl 0.002 6.998 17 C -0.161 4.161 18 C 0.107 3.893 19 F -0.109 7.109 20 H 0.074 0.926 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.194 0.806 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.257 -17.147 -0.007 17.149 hybrid contribution 0.215 1.234 -0.009 1.253 sum 0.472 -15.913 -0.016 15.920 Atomic orbital electron populations 1.70106 1.07870 1.27939 1.51265 1.26004 0.95805 1.03473 0.94448 0.85399 0.78668 0.78114 0.78596 1.19632 1.20612 1.18598 1.21634 0.93679 0.91974 1.51140 0.91810 1.18872 0.93836 0.92221 0.94844 1.20482 0.97732 0.89580 1.02745 1.20398 1.03512 0.99089 0.92234 1.17082 0.99044 0.92786 0.80370 1.91524 1.90146 1.84021 1.45189 1.21165 1.00331 0.94319 1.00252 1.20128 0.98243 0.90481 0.92884 1.98396 1.74022 1.28580 1.98834 1.21166 1.00402 0.94241 1.00257 1.17084 0.99102 0.92715 0.80383 1.91522 1.90245 1.83877 1.45234 0.92633 0.99042 0.99038 0.90902 0.90923 0.80561 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.24 15 2 C 0.00 0.04 5.46 84.65 0.46 0.50 15 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 7 C -0.55 -31.72 9.11 25.60 0.23 -31.49 15 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.04 2.14 4.95 29.85 0.15 2.29 15 10 C -0.07 -2.94 4.93 29.85 0.15 -2.79 15 11 C -0.15 -5.45 5.15 -19.77 -0.10 -5.55 15 12 C 0.13 4.08 7.24 22.37 0.16 4.24 15 13 F -0.13 -4.57 16.47 44.97 0.74 -3.83 15 14 C -0.14 -3.44 9.81 22.34 0.22 -3.23 15 15 C 0.01 0.22 6.32 22.31 0.14 0.36 15 16 Cl -0.03 -0.49 28.95 -2.72 -0.08 -0.57 15 17 C -0.14 -3.44 9.81 22.34 0.22 -3.22 15 18 C 0.13 4.08 7.24 22.37 0.16 4.24 15 19 F -0.13 -4.57 16.48 44.97 0.74 -3.83 15 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 22 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 23 H 0.07 3.06 7.64 -2.39 -0.02 3.04 15 24 H 0.07 3.05 7.63 -2.38 -0.02 3.03 15 25 H 0.18 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.18 3.26 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -64.70 259.78 6.71 -57.99 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: 1.21 Total: -4.60 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 1.79 Total: -34.64 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 1.48 Total: -7.66 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -64.70 6.71 -57.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225612.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.629 kcal (2) G-P(sol) polarization free energy of solvation -64.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds