Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30154 * 126.22665 * 2 1 4 4 N 1.28657 * 109.50221 * 179.74673 * 3 2 1 5 5 C 1.30916 * 109.32553 * 0.38393 * 4 3 2 6 6 O 1.35380 * 126.34945 * 179.88079 * 5 4 3 7 7 C 1.35611 * 118.00151 * 6.13895 * 6 5 4 8 8 C 1.38497 * 120.26811 * 8.95409 * 7 6 5 9 9 C 1.38271 * 120.04652 * 179.77379 * 8 7 6 10 10 C 1.38840 * 120.59880 * 0.51813 * 9 8 7 11 11 C 1.36474 * 120.54569 * 359.73593 * 10 9 8 12 12 C 1.40737 * 119.93193 * 0.02562 * 11 10 9 13 13 C 1.41117 * 120.29123 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00018 * 144.72778 * 13 12 11 15 15 C 1.39926 * 120.00468 * 324.72885 * 13 12 11 16 16 N 1.30871 * 119.99422 * 328.92074 * 15 13 12 17 17 Si 1.86792 * 120.00339 * 148.91932 * 15 13 12 18 18 H 1.48496 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47265 * 120.00352 * 17 15 13 20 20 H 1.48502 * 109.47232 * 240.00451 * 17 15 13 21 21 O 1.34530 * 107.30125 * 359.62440 * 5 4 3 22 22 H 1.08998 * 109.46892 * 270.02430 * 1 2 3 23 23 H 1.08997 * 109.47252 * 30.02279 * 1 2 3 24 24 H 1.09001 * 109.47247 * 150.02651 * 1 2 3 25 25 H 1.08003 * 119.98007 * 0.02562 * 8 7 6 26 26 H 1.08003 * 119.69939 * 180.23218 * 9 8 7 27 27 H 1.07996 * 119.72502 * 179.76613 * 10 9 8 28 28 H 1.07996 * 120.03312 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99833 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0499 0.0000 4 7 3.5083 0.6797 0.0054 5 6 3.5677 -0.6281 0.0007 6 8 4.6934 -1.3802 0.0018 7 6 5.8837 -0.7445 0.1362 8 6 5.9235 0.6035 0.4517 9 6 7.1397 1.2460 0.5923 10 6 8.3297 0.5544 0.4095 11 6 8.3188 -0.7731 0.0930 12 6 7.0937 -1.4507 -0.0507 13 6 7.0736 -2.8234 -0.3773 14 1 6.3100 -3.4657 0.0360 15 6 8.0430 -3.3525 -1.2365 16 7 8.5561 -2.6072 -2.1821 17 14 8.6047 -5.1224 -1.0340 18 1 7.8763 -5.7463 0.0997 19 1 8.3201 -5.8778 -2.2804 20 1 10.0641 -5.1504 -0.7606 21 8 2.3028 -1.0861 0.0004 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 5.0039 1.1523 0.5920 26 1 7.1643 2.2965 0.8421 27 1 9.2716 1.0712 0.5191 28 1 9.2493 -1.3028 -0.0477 29 1 9.2278 -2.9741 -2.7780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260287482.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = 54.333032 kcal Electronic energy + Delta-G solvation = -17066.503524 eV Core-core repulsion = 14151.513524 eV Total energy + Delta-G solvation = -2914.990001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.82000 -39.53440 -36.70380 -35.87938 -33.76356 -32.36544 -30.06790 -29.08715 -27.73189 -25.40465 -23.58787 -22.46339 -21.39308 -20.75336 -18.06786 -17.69457 -17.38163 -16.58157 -15.49980 -15.09941 -14.50217 -14.42660 -14.20184 -13.28164 -13.09104 -12.95126 -12.84976 -12.53146 -12.08325 -11.89597 -11.49216 -11.33596 -11.10249 -10.96277 -10.56493 -10.45075 -9.83526 -9.47400 -9.12070 -8.87161 -7.62748 -7.30995 -6.95795 -4.46451 1.49577 1.67838 2.53307 2.70767 2.91653 3.02972 3.07138 3.12638 3.84828 3.86521 4.42752 4.59375 4.88749 5.22687 5.24663 5.35669 5.44787 5.61343 5.92672 6.16870 6.29038 6.44739 6.75191 6.94318 7.07421 7.24099 7.49164 7.59359 7.88285 8.01305 8.06941 8.41006 8.59637 8.68084 8.78589 9.99333 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.006986 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.635360 B = 4007.086204 C = 4895.288038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.127 3.873 3 N -0.272 5.272 4 N -0.324 5.324 5 C 0.372 3.628 6 O -0.170 6.170 7 C -0.053 4.053 8 C -0.138 4.138 9 C -0.221 4.221 10 C -0.100 4.100 11 C -0.159 4.159 12 C 0.140 3.860 13 C -0.474 4.474 14 H 0.087 0.913 15 C 0.089 3.911 16 N -0.772 5.772 17 Si 0.899 3.101 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.269 1.269 21 O -0.222 6.222 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.164 0.836 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 0.988 2.592 9.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.086 4.086 3 N -0.119 5.119 4 N -0.190 5.190 5 C 0.128 3.872 6 O -0.071 6.071 7 C -0.094 4.094 8 C -0.158 4.158 9 C -0.240 4.240 10 C -0.118 4.118 11 C -0.178 4.178 12 C 0.137 3.863 13 C -0.502 4.502 14 H 0.105 0.895 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.722 3.278 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.194 1.194 21 O -0.106 6.106 22 H 0.111 0.889 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.180 0.820 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.165 1.854 2.351 8.696 hybrid contribution 0.169 -2.017 -0.131 2.028 sum -7.996 -0.163 2.221 8.300 Atomic orbital electron populations 1.20200 0.80160 1.05202 1.04697 1.27441 0.96833 0.79046 1.05283 1.74170 0.96628 1.25960 1.15123 1.75022 1.10205 1.06188 1.27554 1.24955 0.81842 0.85733 0.94647 1.84189 1.08842 1.31867 1.82158 1.19161 0.79617 0.92501 1.18089 1.22370 1.00748 0.93249 0.99383 1.20284 0.91808 0.98639 1.13292 1.20540 0.96677 0.94791 0.99831 1.20585 0.96316 0.94225 1.06712 1.16871 0.86755 0.93060 0.89572 1.19353 1.12053 0.93464 1.25334 0.89486 1.25843 0.94245 1.00305 0.92803 1.69925 1.20690 1.39117 1.09797 0.86421 0.79460 0.82300 0.79621 1.18045 1.19912 1.19388 1.84711 1.15088 1.38023 1.72790 0.88885 0.87830 0.89317 0.81998 0.88377 0.88661 0.87286 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.38 10.51 36.00 0.38 0.00 15 2 C 0.13 1.96 8.48 -12.99 -0.11 1.85 15 3 N -0.27 -5.08 12.21 32.58 0.40 -4.68 15 4 N -0.32 -7.00 8.13 29.25 0.24 -6.76 15 5 C 0.37 8.17 9.05 52.37 0.47 8.64 15 6 O -0.17 -4.21 9.53 -24.23 -0.23 -4.44 15 7 C -0.05 -1.36 6.68 -38.31 -0.26 -1.62 15 8 C -0.14 -3.33 8.91 -39.47 -0.35 -3.68 15 9 C -0.22 -5.03 10.04 -39.35 -0.39 -5.42 15 10 C -0.10 -2.28 9.97 -40.00 -0.40 -2.68 15 11 C -0.16 -3.99 8.80 -39.27 -0.35 -4.34 15 12 C 0.14 3.75 5.41 -106.68 -0.58 3.17 15 13 C -0.47 -12.57 8.47 -37.86 -0.32 -12.89 15 14 H 0.09 2.29 7.95 -52.49 -0.42 1.87 15 15 C 0.09 2.22 4.74 -17.33 -0.08 2.13 15 16 N -0.77 -19.70 12.64 55.55 0.70 -19.00 15 17 Si 0.90 18.23 29.65 -169.99 -5.04 13.19 15 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 21 O -0.22 -4.13 10.89 -18.95 -0.21 -4.33 15 22 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.16 3.78 4.40 -115.20 -0.51 3.28 15 26 H 0.10 1.97 8.06 -52.48 -0.42 1.55 15 27 H 0.10 1.88 8.06 -52.49 -0.42 1.45 15 28 H 0.11 2.70 7.40 -52.49 -0.39 2.31 15 29 H 0.28 6.50 8.30 -40.82 -0.34 6.17 15 LS Contribution 264.01 15.07 3.98 3.98 Total: -1.00 -29.67 264.01 -4.71 -34.37 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -2.56 Total: 2.51 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.98 Total: -14.83 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 1.34 Total: -30.44 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.44 Total: -8.78 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.04 Total: 13.19 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.67 -4.71 -34.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287482.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.706 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds