Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30154 * 126.22665 * 2 1 4 4 N 1.28657 * 109.50221 * 179.74673 * 3 2 1 5 5 C 1.30916 * 109.32553 * 0.38393 * 4 3 2 6 6 O 1.35380 * 126.34945 * 179.88079 * 5 4 3 7 7 C 1.35611 * 118.00151 * 6.13895 * 6 5 4 8 8 C 1.38497 * 120.26811 * 8.95409 * 7 6 5 9 9 C 1.38271 * 120.04652 * 179.77379 * 8 7 6 10 10 C 1.38840 * 120.59880 * 0.51813 * 9 8 7 11 11 C 1.36474 * 120.54569 * 359.73593 * 10 9 8 12 12 C 1.40737 * 119.93193 * 0.02562 * 11 10 9 13 13 C 1.41117 * 120.29123 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00018 * 144.72778 * 13 12 11 15 15 C 1.39926 * 120.00468 * 324.72885 * 13 12 11 16 16 N 1.30871 * 119.99422 * 328.92074 * 15 13 12 17 17 Si 1.86792 * 120.00339 * 148.91932 * 15 13 12 18 18 H 1.48496 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47265 * 120.00352 * 17 15 13 20 20 H 1.48502 * 109.47232 * 240.00451 * 17 15 13 21 21 O 1.34530 * 107.30125 * 359.62440 * 5 4 3 22 22 H 1.08998 * 109.46892 * 270.02430 * 1 2 3 23 23 H 1.08997 * 109.47252 * 30.02279 * 1 2 3 24 24 H 1.09001 * 109.47247 * 150.02651 * 1 2 3 25 25 H 1.08003 * 119.98007 * 0.02562 * 8 7 6 26 26 H 1.08003 * 119.69939 * 180.23218 * 9 8 7 27 27 H 1.07996 * 119.72502 * 179.76613 * 10 9 8 28 28 H 1.07996 * 120.03312 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99833 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0499 0.0000 4 7 3.5083 0.6797 0.0054 5 6 3.5677 -0.6281 0.0007 6 8 4.6934 -1.3802 0.0018 7 6 5.8837 -0.7445 0.1362 8 6 5.9235 0.6035 0.4517 9 6 7.1397 1.2460 0.5923 10 6 8.3297 0.5544 0.4095 11 6 8.3188 -0.7731 0.0930 12 6 7.0937 -1.4507 -0.0507 13 6 7.0736 -2.8234 -0.3773 14 1 6.3100 -3.4657 0.0360 15 6 8.0430 -3.3525 -1.2365 16 7 8.5561 -2.6072 -2.1821 17 14 8.6047 -5.1224 -1.0340 18 1 7.8763 -5.7463 0.0997 19 1 8.3201 -5.8778 -2.2804 20 1 10.0641 -5.1504 -0.7606 21 8 2.3028 -1.0861 0.0004 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 5.0039 1.1523 0.5920 26 1 7.1643 2.2965 0.8421 27 1 9.2716 1.0712 0.5191 28 1 9.2493 -1.3028 -0.0477 29 1 9.2278 -2.9741 -2.7780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260287482.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = 32.621980 kcal Electronic energy + Delta-G solvation = -17067.444986 eV Core-core repulsion = 14151.513524 eV Total energy + Delta-G solvation = -2915.931462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.32412 -41.32649 -38.53577 -37.39742 -35.62818 -33.56309 -31.89992 -30.93449 -28.98313 -27.29305 -25.24658 -23.89587 -23.13561 -22.52740 -19.82689 -19.49450 -18.95851 -18.24882 -17.14410 -16.83826 -16.17491 -16.09806 -15.52283 -15.08244 -14.63991 -14.37458 -13.96598 -13.72759 -13.57790 -13.48802 -13.31905 -12.95318 -12.79533 -12.60097 -12.20010 -12.16522 -11.62314 -11.21276 -10.95702 -10.42045 -9.53273 -9.15601 -8.79869 -6.41967 -0.01721 0.14194 0.81107 0.90401 1.25969 1.36314 1.44317 1.53005 2.18340 2.50930 2.58235 3.21121 3.38091 3.44369 3.90729 4.33363 4.41426 4.52601 4.59413 4.64453 4.76360 4.91864 5.06684 5.11141 5.23335 5.40289 5.64022 5.73762 6.00825 6.11131 6.24217 6.49585 6.71127 6.86706 7.17297 8.19065 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.006986 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.635360 B = 4007.086204 C = 4895.288038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.161 3.839 3 N -0.306 5.306 4 N -0.335 5.335 5 C 0.346 3.654 6 O -0.195 6.195 7 C -0.068 4.068 8 C -0.149 4.149 9 C -0.217 4.217 10 C -0.098 4.098 11 C -0.175 4.175 12 C 0.109 3.891 13 C -0.511 4.511 14 H 0.073 0.927 15 C 0.054 3.946 16 N -0.807 5.807 17 Si 0.974 3.026 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.256 1.256 21 O -0.223 6.223 22 H 0.123 0.877 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.171 0.829 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 1.192 2.811 10.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.051 4.051 3 N -0.151 5.151 4 N -0.200 5.200 5 C 0.100 3.900 6 O -0.096 6.096 7 C -0.109 4.109 8 C -0.169 4.169 9 C -0.236 4.236 10 C -0.117 4.117 11 C -0.195 4.195 12 C 0.106 3.894 13 C -0.539 4.539 14 H 0.091 0.909 15 C -0.165 4.165 16 N -0.431 5.431 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.180 1.180 21 O -0.108 6.108 22 H 0.142 0.858 23 H 0.145 0.855 24 H 0.132 0.868 25 H 0.187 0.813 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.315 2.098 2.571 9.888 hybrid contribution 0.242 -1.929 -0.187 1.953 sum -9.073 0.168 2.384 9.382 Atomic orbital electron populations 1.20790 0.74777 1.07558 1.07298 1.29078 0.98760 0.77409 0.99812 1.74142 0.95868 1.26862 1.18253 1.74854 1.12133 1.06073 1.26907 1.24906 0.82094 0.85928 0.97042 1.84065 1.09509 1.32826 1.83209 1.19391 0.80089 0.93186 1.18228 1.22630 1.01887 0.92847 0.99513 1.20722 0.91207 1.00112 1.11602 1.20888 0.98353 0.94029 0.98403 1.20666 0.95661 0.95380 1.07743 1.17251 0.87864 0.93754 0.90517 1.19459 1.13522 0.93798 1.27105 0.90880 1.26638 0.93527 1.04688 0.91624 1.69928 1.21403 1.41338 1.10428 0.85307 0.79306 0.76508 0.79526 1.18392 1.18913 1.17972 1.84762 1.14163 1.39217 1.72619 0.85845 0.85473 0.86794 0.81297 0.85179 0.85152 0.87778 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.60 10.51 71.23 0.75 0.15 15 2 C 0.16 4.67 8.48 88.36 0.75 5.42 15 3 N -0.31 -11.12 12.21 -165.30 -2.02 -13.14 15 4 N -0.33 -14.56 8.13 -289.25 -2.35 -16.92 15 5 C 0.35 15.54 9.05 130.38 1.18 16.72 15 6 O -0.19 -10.12 9.53 -4.88 -0.05 -10.16 15 7 C -0.07 -3.65 6.68 23.10 0.15 -3.49 15 8 C -0.15 -7.30 8.91 22.34 0.20 -7.10 15 9 C -0.22 -9.69 10.04 22.42 0.23 -9.47 15 10 C -0.10 -4.42 9.97 22.00 0.22 -4.20 15 11 C -0.18 -8.97 8.80 22.47 0.20 -8.77 15 12 C 0.11 6.05 5.41 -21.20 -0.11 5.94 15 13 C -0.51 -28.33 8.47 23.39 0.20 -28.13 15 14 H 0.07 4.09 7.95 -2.91 -0.02 4.07 15 15 C 0.05 2.72 4.74 85.25 0.40 3.13 15 16 N -0.81 -42.01 12.64 21.83 0.28 -41.73 15 17 Si 0.97 37.90 29.65 68.60 2.03 39.94 15 18 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 20 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 21 O -0.22 -8.20 10.89 14.01 0.15 -8.05 15 22 H 0.12 1.01 8.14 -2.39 -0.02 0.99 15 23 H 0.13 1.16 8.14 -2.39 -0.02 1.14 15 24 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 25 H 0.17 7.98 4.40 -84.06 -0.37 7.61 15 26 H 0.13 4.90 8.06 -2.91 -0.02 4.87 15 27 H 0.13 4.84 8.06 -2.91 -0.02 4.82 15 28 H 0.10 5.29 7.40 -2.91 -0.02 5.27 15 29 H 0.30 13.61 8.30 -92.70 -0.77 12.84 15 Total: -1.00 -67.47 264.01 3.04 -64.44 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.83 Total: 15.44 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.16 Total: -29.82 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -4.09 Total: -71.79 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.11 Total: -18.21 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.94 kcal Total: -67.47 3.04 -64.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287482.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.058 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds