Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 119.99742 * 2 1 4 4 H 1.48501 * 109.47047 * 269.99972 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00025 * 3 2 1 6 6 H 1.48504 * 109.47257 * 149.99812 * 3 2 1 7 7 C 1.39928 * 120.00671 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00618 * 197.50184 * 7 2 1 9 9 C 1.41410 * 119.99712 * 17.49828 * 7 2 1 10 10 C 1.40778 * 120.21368 * 25.01009 * 9 7 2 11 11 C 1.37631 * 119.86132 * 180.24873 * 10 9 7 12 12 C 1.38547 * 120.31399 * 359.49843 * 11 10 9 13 13 C 1.39159 * 120.43444 * 0.25029 * 12 11 10 14 14 O 1.35874 * 119.93219 * 180.02562 * 13 12 11 15 15 C 1.36193 * 118.00268 * 282.82149 * 14 13 12 16 16 C 1.38695 * 122.59606 * 178.98952 * 15 14 13 17 17 C 1.33410 * 114.88766 * 179.76167 * 16 15 14 18 18 S 1.75864 * 109.67067 * 0.48262 * 17 16 15 19 19 C 1.33674 * 122.59359 * 359.28448 * 15 14 13 20 20 C 1.38176 * 120.12948 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00501 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.06646 * 0.02562 * 10 9 7 23 23 H 1.08010 * 119.84509 * 179.77107 * 11 10 9 24 24 H 1.08001 * 119.78843 * 180.23394 * 12 11 10 25 25 H 1.07998 * 122.55363 * 0.02562 * 16 15 14 26 26 H 1.08003 * 125.16186 * 180.24373 * 17 16 15 27 27 H 1.07999 * 125.19680 * 0.02562 * 19 15 14 28 28 H 1.07996 * 120.15301 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0081 -1.2117 0.0005 8 1 3.0505 -1.2332 0.2818 9 6 1.3502 -2.4082 -0.3672 10 6 0.2218 -2.3667 -1.2079 11 6 -0.4160 -3.5353 -1.5571 12 6 0.0533 -4.7536 -1.0934 13 6 1.1707 -4.8099 -0.2660 14 8 1.6225 -6.0103 0.1824 15 6 0.9463 -6.6075 1.2027 16 6 1.3118 -7.8414 1.7200 17 6 0.5456 -8.2800 2.7202 18 16 -0.7249 -7.1096 3.0499 19 6 -0.1244 -6.0524 1.7791 20 6 1.8216 -3.6474 0.1005 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1448 -1.4195 -1.5752 23 1 -1.2840 -3.5028 -2.1991 24 1 -0.4515 -5.6657 -1.3758 25 1 2.1550 -8.4022 1.3447 26 1 0.6824 -9.2141 3.2449 27 1 -0.5552 -5.1005 1.5059 28 1 2.6886 -3.6906 0.7430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260302715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = 21.305367 kcal Electronic energy + Delta-G solvation = -14641.601616 eV Core-core repulsion = 12135.639548 eV Total energy + Delta-G solvation = -2505.962068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81139 -37.23169 -35.56560 -33.50545 -30.02200 -28.89698 -28.51357 -25.41749 -23.92390 -21.05455 -20.95381 -19.25608 -17.79635 -17.62000 -16.06302 -15.43420 -14.95706 -14.58854 -14.24154 -13.88668 -13.14361 -13.00194 -12.55336 -12.40576 -11.82726 -11.69662 -11.54039 -11.18642 -11.03876 -10.68514 -10.54599 -10.50175 -10.02616 -9.50911 -9.25835 -8.53638 -7.69756 -7.66345 -7.37750 -6.87848 -4.49875 1.26710 1.87511 2.21997 2.58207 2.69770 3.02031 3.05770 3.07801 3.11814 3.84701 4.10863 4.53268 5.23537 5.49606 5.54158 5.89732 6.08304 6.11487 6.26690 6.30880 6.64840 6.79580 6.87101 6.99596 7.10528 7.20485 7.64909 7.75031 7.88948 7.99465 8.33477 8.55573 8.75213 8.81994 10.06891 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.005546 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.112922 B = 5047.926241 C = 5186.149250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.161 4.161 11 C -0.094 4.094 12 C -0.252 4.252 13 C 0.096 3.904 14 O -0.256 6.256 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.202 4.202 18 S 0.094 5.906 19 C -0.293 4.293 20 C -0.221 4.221 21 H 0.283 0.717 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.146 0.854 26 H 0.167 0.833 27 H 0.172 0.828 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -8.163 3.449 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.181 4.181 11 C -0.113 4.113 12 C -0.271 4.271 13 C 0.055 3.945 14 O -0.169 6.169 15 C 0.057 3.943 16 C -0.169 4.169 17 C -0.337 4.337 18 S 0.353 5.647 19 C -0.429 4.429 20 C -0.241 4.241 21 H 0.094 0.906 22 H 0.140 0.860 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.164 0.836 26 H 0.185 0.815 27 H 0.190 0.810 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.115 -7.982 4.385 9.349 hybrid contribution 1.308 0.821 -0.964 1.820 sum -0.807 -7.161 3.421 7.977 Atomic orbital electron populations 1.69809 1.07629 1.29519 1.34558 1.25927 0.94771 1.01472 0.92061 0.86254 0.80498 0.80248 0.79442 1.19133 1.20213 1.18499 1.19600 0.98133 0.90936 1.40131 0.90100 1.17454 0.91104 0.91311 0.88565 1.21423 0.99153 0.97048 1.00448 1.20559 0.98620 0.92505 0.99589 1.20543 1.00725 0.97150 1.08729 1.18418 0.96422 0.82005 0.97617 1.84347 1.52110 1.33859 1.46568 1.18102 0.92455 0.92917 0.90788 1.19456 1.03198 0.95357 0.98878 1.25367 1.00699 1.04321 1.03329 1.83951 1.31562 1.12645 1.36498 1.25540 1.04692 1.07194 1.05442 1.21108 1.04791 0.91191 1.06976 0.90645 0.86014 0.88644 0.88773 0.83632 0.81529 0.81041 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 10.97 55.55 0.61 -19.22 15 2 C 0.08 1.86 5.14 -17.35 -0.09 1.77 15 3 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 15 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 15 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 15 9 C 0.12 3.11 5.57 -106.84 -0.59 2.52 15 10 C -0.16 -4.10 8.69 -38.84 -0.34 -4.43 15 11 C -0.09 -2.18 10.02 -39.69 -0.40 -2.57 15 12 C -0.25 -5.75 9.20 -39.13 -0.36 -6.11 15 13 C 0.10 2.27 4.62 -39.26 -0.18 2.09 15 14 O -0.26 -5.61 10.05 -4.47 -0.04 -5.66 15 15 C 0.11 2.12 6.57 -41.01 -0.27 1.85 15 16 C -0.14 -2.09 10.17 -41.10 -0.42 -2.51 15 17 C -0.20 -2.63 11.22 29.04 0.33 -2.30 15 18 S 0.09 1.35 23.34 -107.50 -2.51 -1.16 15 19 C -0.29 -5.48 10.02 29.13 0.29 -5.19 15 20 C -0.22 -5.54 9.73 -38.72 -0.38 -5.92 15 21 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 22 H 0.12 3.15 6.18 -52.48 -0.32 2.83 15 23 H 0.10 1.94 8.06 -52.48 -0.42 1.52 15 24 H 0.09 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.15 1.92 8.06 -52.49 -0.42 1.49 15 26 H 0.17 1.56 8.06 -52.48 -0.42 1.13 15 27 H 0.17 3.56 7.00 -52.49 -0.37 3.19 15 28 H 0.10 2.47 8.06 -52.49 -0.42 2.05 15 LS Contribution 264.95 15.07 3.99 3.99 Total: -1.00 -27.00 264.95 -8.09 -35.09 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.36 Total: 6.85 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -2.75 Total: -33.09 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.04 Total: -5.66 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.51 Total: -1.16 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.00 -8.09 -35.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.390 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds