Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 119.99742 * 2 1 4 4 H 1.48501 * 109.47047 * 269.99972 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00025 * 3 2 1 6 6 H 1.48504 * 109.47257 * 149.99812 * 3 2 1 7 7 C 1.39928 * 120.00671 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00618 * 197.50184 * 7 2 1 9 9 C 1.41410 * 119.99712 * 17.49828 * 7 2 1 10 10 C 1.40778 * 120.21368 * 25.01009 * 9 7 2 11 11 C 1.37631 * 119.86132 * 180.24873 * 10 9 7 12 12 C 1.38547 * 120.31399 * 359.49843 * 11 10 9 13 13 C 1.39159 * 120.43444 * 0.25029 * 12 11 10 14 14 O 1.35874 * 119.93219 * 180.02562 * 13 12 11 15 15 C 1.36193 * 118.00268 * 282.82149 * 14 13 12 16 16 C 1.38695 * 122.59606 * 178.98952 * 15 14 13 17 17 C 1.33410 * 114.88766 * 179.76167 * 16 15 14 18 18 S 1.75864 * 109.67067 * 0.48262 * 17 16 15 19 19 C 1.33674 * 122.59359 * 359.28448 * 15 14 13 20 20 C 1.38176 * 120.12948 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00501 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.06646 * 0.02562 * 10 9 7 23 23 H 1.08010 * 119.84509 * 179.77107 * 11 10 9 24 24 H 1.08001 * 119.78843 * 180.23394 * 12 11 10 25 25 H 1.07998 * 122.55363 * 0.02562 * 16 15 14 26 26 H 1.08003 * 125.16186 * 180.24373 * 17 16 15 27 27 H 1.07999 * 125.19680 * 0.02562 * 19 15 14 28 28 H 1.07996 * 120.15301 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0081 -1.2117 0.0005 8 1 3.0505 -1.2332 0.2818 9 6 1.3502 -2.4082 -0.3672 10 6 0.2218 -2.3667 -1.2079 11 6 -0.4160 -3.5353 -1.5571 12 6 0.0533 -4.7536 -1.0934 13 6 1.1707 -4.8099 -0.2660 14 8 1.6225 -6.0103 0.1824 15 6 0.9463 -6.6075 1.2027 16 6 1.3118 -7.8414 1.7200 17 6 0.5456 -8.2800 2.7202 18 16 -0.7249 -7.1096 3.0499 19 6 -0.1244 -6.0524 1.7791 20 6 1.8216 -3.6474 0.1005 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1448 -1.4195 -1.5752 23 1 -1.2840 -3.5028 -2.1991 24 1 -0.4515 -5.6657 -1.3758 25 1 2.1550 -8.4022 1.3447 26 1 0.6824 -9.2141 3.2449 27 1 -0.5552 -5.1005 1.5059 28 1 2.6886 -3.6906 0.7430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260302715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = 7.785870 kcal Electronic energy + Delta-G solvation = -14642.187865 eV Core-core repulsion = 12135.639548 eV Total energy + Delta-G solvation = -2506.548317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43241 -38.96194 -37.06345 -35.36513 -31.93384 -30.59090 -29.98072 -27.33849 -25.35441 -22.85287 -22.69977 -20.79951 -19.33180 -19.06892 -17.81098 -17.19471 -16.75611 -16.33958 -15.77891 -15.08309 -14.81290 -14.63464 -14.24072 -13.91379 -13.53176 -13.21656 -13.16452 -12.79735 -12.76821 -12.36872 -12.15920 -11.90510 -11.82009 -11.33806 -11.10012 -9.77911 -9.58410 -9.35872 -8.94445 -8.72750 -6.47345 0.02947 0.54316 0.79123 0.83604 1.04734 1.37466 1.48322 1.51112 1.74908 2.17192 2.44129 2.72554 3.58885 4.03037 4.30527 4.41158 4.46357 4.48288 4.87595 4.90151 4.94037 4.95990 5.13478 5.23540 5.27556 5.42884 5.77424 5.86385 5.95900 6.08025 6.45264 6.69234 6.81745 6.93938 8.24394 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.005546 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.112922 B = 5047.926241 C = 5186.149250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.077 0.923 9 C 0.096 3.904 10 C -0.184 4.184 11 C -0.089 4.089 12 C -0.252 4.252 13 C 0.106 3.894 14 O -0.271 6.271 15 C 0.090 3.910 16 C -0.159 4.159 17 C -0.168 4.168 18 S 0.141 5.859 19 C -0.330 4.330 20 C -0.246 4.246 21 H 0.293 0.707 22 H 0.112 0.888 23 H 0.125 0.875 24 H 0.112 0.888 25 H 0.167 0.833 26 H 0.216 0.784 27 H 0.141 0.859 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -9.359 4.317 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.095 0.905 9 C 0.093 3.907 10 C -0.203 4.203 11 C -0.107 4.107 12 C -0.272 4.272 13 C 0.065 3.935 14 O -0.184 6.184 15 C 0.036 3.964 16 C -0.191 4.191 17 C -0.303 4.303 18 S 0.401 5.599 19 C -0.466 4.466 20 C -0.266 4.266 21 H 0.103 0.897 22 H 0.130 0.870 23 H 0.143 0.857 24 H 0.130 0.870 25 H 0.184 0.816 26 H 0.232 0.768 27 H 0.159 0.841 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.383 -9.203 5.259 10.865 hybrid contribution 1.303 1.024 -1.137 2.010 sum -1.081 -8.179 4.122 9.223 Atomic orbital electron populations 1.69844 1.08994 1.31062 1.34323 1.26785 0.95559 1.04557 0.90903 0.85137 0.78979 0.75486 0.79746 1.18350 1.18927 1.18351 1.19853 0.98339 0.92183 1.41973 0.90461 1.17770 0.91826 0.91983 0.89090 1.21407 0.99849 0.97499 1.01579 1.20851 0.98955 0.91811 0.99110 1.20754 1.00437 0.97779 1.08206 1.18443 0.95812 0.82335 0.96928 1.84247 1.53109 1.33060 1.48008 1.18646 0.92836 0.94370 0.90499 1.19638 1.04984 0.94322 1.00109 1.25961 0.98199 1.04820 1.01361 1.83771 1.31205 1.11260 1.33696 1.25506 1.05611 1.07376 1.08069 1.21162 1.05484 0.91879 1.08106 0.89660 0.86975 0.85717 0.86957 0.81553 0.76769 0.84140 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.77 10.97 21.82 0.24 -41.53 15 2 C 0.04 1.90 5.14 85.25 0.44 2.33 15 3 Si 0.99 37.48 29.59 68.60 2.03 39.52 15 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 15 5 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 7 C -0.49 -26.82 9.05 23.46 0.21 -26.61 15 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 15 9 C 0.10 5.28 5.57 -21.30 -0.12 5.16 15 10 C -0.18 -9.65 8.69 22.75 0.20 -9.46 15 11 C -0.09 -4.15 10.02 22.20 0.22 -3.93 15 12 C -0.25 -11.63 9.20 22.57 0.21 -11.42 15 13 C 0.11 5.16 4.62 22.48 0.10 5.26 15 14 O -0.27 -12.09 10.05 -38.90 -0.39 -12.48 15 15 C 0.09 3.44 6.57 21.34 0.14 3.58 15 16 C -0.16 -4.51 10.17 21.29 0.22 -4.29 15 17 C -0.17 -3.69 11.22 66.73 0.75 -2.94 15 18 S 0.14 3.72 23.34 -56.49 -1.32 2.40 15 19 C -0.33 -12.39 10.02 66.78 0.67 -11.72 15 20 C -0.25 -13.00 9.73 22.83 0.22 -12.78 15 21 H 0.29 13.37 8.30 -92.71 -0.77 12.60 15 22 H 0.11 6.01 6.18 -2.91 -0.02 5.99 15 23 H 0.12 4.97 8.06 -2.91 -0.02 4.95 15 24 H 0.11 4.71 8.06 -2.91 -0.02 4.69 15 25 H 0.17 3.93 8.06 -2.91 -0.02 3.90 15 26 H 0.22 2.65 8.06 -2.91 -0.02 2.62 15 27 H 0.14 6.12 7.00 -2.91 -0.02 6.10 15 28 H 0.09 4.94 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -60.65 264.95 4.99 -55.66 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.17 Total: 23.25 kcal Atomic # 6 Polarization: -70.08 SS G_CDS: 3.26 Total: -66.82 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.24 Total: -41.53 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.39 Total: -12.48 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.32 Total: 2.40 kcal Total: -60.65 4.99 -55.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.443 kcal (2) G-P(sol) polarization free energy of solvation -60.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds