Wall clock time and date at job start Mon Mar 30 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.36125 * 120.17111 * 265.00098 * 10 9 7 12 12 C 1.39327 * 120.98536 * 180.02562 * 11 10 9 13 13 C 1.36139 * 120.98429 * 359.97198 * 12 11 10 14 14 C 1.40469 * 119.65641 * 0.02562 * 13 12 11 15 15 C 1.40657 * 121.29304 * 179.97438 * 14 13 12 16 16 Cl 1.73600 * 120.18713 * 359.97438 * 15 14 13 17 17 C 1.36212 * 119.62430 * 179.97438 * 15 14 13 18 18 C 1.39346 * 120.98052 * 359.97438 * 17 15 14 19 19 C 1.36096 * 121.01184 * 0.02565 * 18 17 15 20 20 C 1.40493 * 120.17460 * 84.72119 * 10 9 7 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 23 23 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 24 24 H 1.08003 * 119.50766 * 359.97341 * 11 10 9 25 25 H 1.08007 * 119.50849 * 179.97438 * 12 11 10 26 26 H 1.08003 * 120.16772 * 180.02562 * 13 12 11 27 27 H 1.07999 * 119.50873 * 180.02562 * 17 15 14 28 28 H 1.08001 * 119.49123 * 180.02562 * 18 17 15 29 29 H 1.07998 * 120.16261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.5924 -4.2287 -1.1871 12 6 3.4958 -5.2891 -1.2126 13 6 4.0430 -5.7714 -0.0631 14 6 3.6933 -5.1940 1.1688 15 6 4.2373 -5.6653 2.3772 16 17 5.3643 -6.9857 2.3709 17 6 3.8747 -5.0799 3.5525 18 6 2.9719 -4.0187 3.5767 19 6 2.4256 -3.5366 2.4272 20 6 2.7786 -4.1115 1.1942 21 1 -0.4849 0.8401 0.0041 22 1 0.6280 -2.5591 0.8866 23 1 0.6206 -2.5548 -0.8933 24 1 2.1725 -3.8653 -2.1134 25 1 3.7662 -5.7351 -2.1584 26 1 4.7424 -6.5936 -0.0982 27 1 4.2939 -5.4430 4.4792 28 1 2.7016 -3.5721 4.5221 29 1 1.7275 -2.7132 2.4619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:54 Heat of formation + Delta-G solvation = 19.627550 kcal Electronic energy + Delta-G solvation = -14763.724589 eV Core-core repulsion = 12255.646059 eV Total energy + Delta-G solvation = -2508.078530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00014 -36.70849 -35.83165 -33.85538 -32.02221 -29.93557 -29.35026 -27.04395 -23.52116 -22.71117 -22.60937 -19.96484 -17.14815 -16.60154 -16.33850 -15.95794 -14.67230 -14.42394 -13.93952 -13.62964 -13.22573 -12.86535 -12.49663 -12.34755 -11.76543 -11.58557 -11.37825 -11.08362 -10.92303 -10.73567 -10.72647 -10.52961 -10.23205 -9.71563 -9.53507 -8.91883 -8.50083 -8.22965 -7.25114 -6.12288 -4.17164 0.93123 1.40438 2.32848 2.48732 3.25931 3.32706 3.36351 3.41636 4.35385 4.59399 5.01286 5.14963 5.22471 5.35042 5.48622 5.60924 5.73851 5.84633 5.97061 6.03010 6.32727 6.50226 6.62302 6.68714 6.76231 7.00120 7.06125 7.19993 7.38215 7.53840 7.69115 7.83044 8.20268 8.87974 9.47454 10.96825 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.006531 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.897957 B = 4286.078765 C = 4718.865568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.010 4.010 11 C -0.142 4.142 12 C -0.093 4.093 13 C -0.147 4.147 14 C -0.040 4.040 15 C -0.040 4.040 16 Cl -0.083 7.083 17 C -0.101 4.101 18 C -0.140 4.140 19 C -0.061 4.061 20 C -0.047 4.047 21 H 0.263 0.737 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -10.355 3.872 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.009 3.991 10 C -0.010 4.010 11 C -0.160 4.160 12 C -0.111 4.111 13 C -0.165 4.165 14 C -0.040 4.040 15 C -0.066 4.066 16 Cl -0.054 7.054 17 C -0.120 4.120 18 C -0.159 4.159 19 C -0.079 4.079 20 C -0.047 4.047 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.341 -10.356 3.871 12.745 hybrid contribution 0.643 0.826 -0.046 1.048 sum 6.984 -9.530 3.825 12.419 Atomic orbital electron populations 1.69951 1.06005 1.26979 1.50118 1.24989 0.94867 0.99228 0.95014 0.86542 0.79898 0.83084 0.78279 1.20540 1.21104 1.19729 1.21002 0.93052 0.89555 1.51491 0.92418 1.18425 0.92488 0.89349 0.98809 1.20619 0.95064 0.94443 0.90893 1.20785 0.99676 0.97089 0.98471 1.20838 0.96303 0.96284 0.97686 1.20791 1.02423 1.01621 0.91636 1.17798 0.97501 0.96347 0.92367 1.20562 0.97521 0.93814 0.94736 1.98314 1.60849 1.47460 1.98804 1.20664 0.98323 0.96638 0.96390 1.20690 0.98796 0.97492 0.98896 1.21515 0.97486 0.97848 0.91016 1.18010 0.97023 0.95082 0.94571 0.92720 0.94820 0.94866 0.86036 0.86600 0.86056 0.85725 0.85559 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.29 55.43 0.74 -24.54 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.51 -13.72 9.09 -34.44 -0.31 -14.03 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.12 4.50 -29.04 -0.13 0.99 15 10 C -0.01 -0.22 5.08 -104.53 -0.53 -0.75 15 11 C -0.14 -2.70 9.57 -39.94 -0.38 -3.08 15 12 C -0.09 -1.53 9.95 -39.93 -0.40 -1.92 15 13 C -0.15 -2.44 9.44 -39.50 -0.37 -2.81 15 14 C -0.04 -0.71 5.74 -106.81 -0.61 -1.33 15 15 C -0.04 -0.64 6.32 -39.40 -0.25 -0.89 15 16 Cl -0.08 -1.14 27.52 -51.86 -1.43 -2.57 15 17 C -0.10 -1.50 9.72 -39.90 -0.39 -1.89 15 18 C -0.14 -2.18 9.94 -39.94 -0.40 -2.58 15 19 C -0.06 -1.13 9.28 -39.48 -0.37 -1.50 15 20 C -0.05 -0.93 5.74 -106.84 -0.61 -1.54 15 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.03 0.85 6.70 -51.93 -0.35 0.50 15 23 H 0.03 0.85 8.04 -51.93 -0.42 0.43 15 24 H 0.12 2.19 8.05 -52.48 -0.42 1.77 15 25 H 0.12 1.53 8.06 -52.48 -0.42 1.11 15 26 H 0.12 1.76 6.99 -52.48 -0.37 1.40 15 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.13 1.61 8.06 -52.49 -0.42 1.18 15 29 H 0.15 2.88 6.49 -52.49 -0.34 2.54 15 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -28.02 267.99 -9.23 -37.25 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -2.70 Total: -0.34 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -4.85 Total: -29.76 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.74 Total: -24.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.43 Total: -2.57 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.02 -9.23 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.874 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds