Wall clock time and date at job start Mon Mar 30 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.36125 * 120.17111 * 265.00098 * 10 9 7 12 12 C 1.39327 * 120.98536 * 180.02562 * 11 10 9 13 13 C 1.36139 * 120.98429 * 359.97198 * 12 11 10 14 14 C 1.40469 * 119.65641 * 0.02562 * 13 12 11 15 15 C 1.40657 * 121.29304 * 179.97438 * 14 13 12 16 16 Cl 1.73600 * 120.18713 * 359.97438 * 15 14 13 17 17 C 1.36212 * 119.62430 * 179.97438 * 15 14 13 18 18 C 1.39346 * 120.98052 * 359.97438 * 17 15 14 19 19 C 1.36096 * 121.01184 * 0.02565 * 18 17 15 20 20 C 1.40493 * 120.17460 * 84.72119 * 10 9 7 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 23 23 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 24 24 H 1.08003 * 119.50766 * 359.97341 * 11 10 9 25 25 H 1.08007 * 119.50849 * 179.97438 * 12 11 10 26 26 H 1.08003 * 120.16772 * 180.02562 * 13 12 11 27 27 H 1.07999 * 119.50873 * 180.02562 * 17 15 14 28 28 H 1.08001 * 119.49123 * 180.02562 * 18 17 15 29 29 H 1.07998 * 120.16261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.5924 -4.2287 -1.1871 12 6 3.4958 -5.2891 -1.2126 13 6 4.0430 -5.7714 -0.0631 14 6 3.6933 -5.1940 1.1688 15 6 4.2373 -5.6653 2.3772 16 17 5.3643 -6.9857 2.3709 17 6 3.8747 -5.0799 3.5525 18 6 2.9719 -4.0187 3.5767 19 6 2.4256 -3.5366 2.4272 20 6 2.7786 -4.1115 1.1942 21 1 -0.4849 0.8401 0.0041 22 1 0.6280 -2.5591 0.8866 23 1 0.6206 -2.5548 -0.8933 24 1 2.1725 -3.8653 -2.1134 25 1 3.7662 -5.7351 -2.1584 26 1 4.7424 -6.5936 -0.0982 27 1 4.2939 -5.4430 4.4792 28 1 2.7016 -3.5721 4.5221 29 1 1.7275 -2.7132 2.4619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:54 Heat of formation + Delta-G solvation = 6.739349 kcal Electronic energy + Delta-G solvation = -14764.283463 eV Core-core repulsion = 12255.646059 eV Total energy + Delta-G solvation = -2508.637404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36714 -37.98337 -37.09350 -35.65009 -33.77358 -31.27050 -30.83675 -28.79761 -25.35026 -24.13523 -23.95134 -21.47629 -18.53753 -18.44093 -17.88964 -17.29960 -16.53981 -15.83960 -15.26029 -15.02169 -14.59338 -14.42947 -14.27969 -13.74289 -13.25766 -13.21204 -12.93275 -12.69137 -12.57843 -12.30120 -12.14631 -12.03295 -11.61405 -11.58194 -11.29380 -10.60699 -10.39274 -9.56913 -8.68027 -8.18891 -6.33417 -0.42266 0.06460 1.08438 1.10743 1.39517 1.40167 1.51406 2.07860 2.39882 3.10331 3.16877 3.76897 3.87506 4.01224 4.16383 4.31688 4.42898 4.46690 4.60066 4.69774 4.95557 5.13371 5.19255 5.31418 5.33494 5.36920 5.48701 5.61223 5.72910 5.82548 6.02289 6.05879 6.19377 6.77607 7.34860 8.88078 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.006531 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.897957 B = 4286.078765 C = 4718.865568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.522 4.522 8 H 0.049 0.951 9 C 0.059 3.941 10 C -0.049 4.049 11 C -0.143 4.143 12 C -0.095 4.095 13 C -0.136 4.136 14 C -0.058 4.058 15 C -0.043 4.043 16 Cl -0.057 7.057 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.097 4.097 20 C -0.063 4.063 21 H 0.266 0.734 22 H 0.013 0.987 23 H 0.007 0.993 24 H 0.121 0.879 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -11.600 4.709 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.049 4.049 11 C -0.161 4.161 12 C -0.113 4.113 13 C -0.153 4.153 14 C -0.058 4.058 15 C -0.069 4.069 16 Cl -0.028 7.028 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.115 4.115 20 C -0.063 4.063 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.025 0.975 24 H 0.139 0.861 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.632 -11.613 4.706 15.216 hybrid contribution -0.014 1.079 -0.246 1.107 sum 8.618 -10.534 4.460 14.322 Atomic orbital electron populations 1.70064 1.07464 1.27925 1.51125 1.25809 0.95670 1.02681 0.94605 0.85527 0.78668 0.78887 0.78500 1.19871 1.20388 1.19262 1.21230 0.92748 0.90956 1.51069 0.93243 1.18105 0.92703 0.90586 0.96397 1.20366 0.96551 0.95096 0.92893 1.20943 0.99912 0.97633 0.97610 1.21115 0.95345 0.95324 0.99517 1.21157 1.01739 1.01408 0.91044 1.18016 0.97586 0.96174 0.94040 1.20700 0.97515 0.94314 0.94385 1.98324 1.59717 1.46024 1.98747 1.21045 0.97345 0.95642 0.97505 1.21030 0.97166 0.96738 0.98873 1.21406 0.99122 0.98719 0.92249 1.18108 0.97824 0.96121 0.94261 0.92523 0.96902 0.97486 0.86088 0.82846 0.83440 0.82125 0.82581 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.12 15 2 C 0.01 0.62 5.46 84.66 0.46 1.08 15 3 Si 0.96 43.69 29.54 68.60 2.03 45.71 15 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 7 C -0.52 -29.19 9.09 25.60 0.23 -28.95 15 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 15 9 C 0.06 3.08 4.50 29.10 0.13 3.21 15 10 C -0.05 -2.18 5.08 -19.81 -0.10 -2.28 15 11 C -0.14 -5.51 9.57 22.04 0.21 -5.30 15 12 C -0.10 -2.96 9.95 22.04 0.22 -2.74 15 13 C -0.14 -4.18 9.44 22.32 0.21 -3.97 15 14 C -0.06 -2.00 5.74 -21.28 -0.12 -2.12 15 15 C -0.04 -1.25 6.32 22.39 0.14 -1.11 15 16 Cl -0.06 -1.36 27.52 -2.72 -0.07 -1.44 15 17 C -0.10 -2.57 9.72 22.06 0.21 -2.35 15 18 C -0.12 -3.54 9.94 22.04 0.22 -3.32 15 19 C -0.10 -3.71 9.28 22.34 0.21 -3.50 15 20 C -0.06 -2.55 5.74 -21.30 -0.12 -2.68 15 21 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 22 H 0.01 0.71 6.70 -2.38 -0.02 0.69 15 23 H 0.01 0.38 8.04 -2.39 -0.02 0.36 15 24 H 0.12 4.51 8.05 -2.91 -0.02 4.49 15 25 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 26 H 0.15 3.72 6.99 -2.91 -0.02 3.70 15 27 H 0.16 3.10 8.06 -2.91 -0.02 3.07 15 28 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 29 H 0.12 5.12 6.49 -2.91 -0.02 5.10 15 Total: -1.00 -62.21 267.99 5.30 -56.91 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.16 Total: 6.96 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 1.90 Total: -54.03 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.28 Total: -54.12 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.44 kcal Total: -62.21 5.30 -56.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.654 kcal (2) G-P(sol) polarization free energy of solvation -62.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds