Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31069 * 126.48570 * 2 1 4 4 C 1.34900 * 105.59713 * 180.02562 * 3 2 1 5 5 O 1.35613 * 126.36006 * 179.97438 * 4 3 2 6 6 C 1.35913 * 117.99917 * 173.52914 * 5 4 3 7 7 C 1.39166 * 119.93766 * 172.43889 * 6 5 4 8 8 C 1.38509 * 120.44429 * 180.02562 * 7 6 5 9 9 C 1.37673 * 120.30997 * 0.23871 * 8 7 6 10 10 C 1.40735 * 119.85169 * 359.51348 * 9 8 7 11 11 C 1.41398 * 120.21418 * 180.23609 * 10 9 8 12 12 H 1.08005 * 120.00269 * 150.70234 * 11 10 9 13 13 C 1.39935 * 120.00314 * 330.70304 * 11 10 9 14 14 N 1.30824 * 120.00408 * 166.61040 * 13 11 10 15 15 Si 1.86801 * 119.99693 * 346.60908 * 13 11 10 16 16 H 1.48502 * 109.47103 * 95.27803 * 15 13 11 17 17 H 1.48500 * 109.47422 * 215.27997 * 15 13 11 18 18 H 1.48502 * 109.47297 * 335.27934 * 15 13 11 19 19 C 1.38110 * 119.93035 * 352.46458 * 6 5 4 20 20 N 1.30469 * 107.27336 * 0.24098 * 4 3 2 21 21 O 1.21300 * 110.15216 * 359.58241 * 20 4 3 22 22 H 1.09001 * 109.47358 * 89.99744 * 1 2 3 23 23 H 1.09001 * 109.47000 * 210.00205 * 1 2 3 24 24 H 1.09001 * 109.46991 * 329.99430 * 1 2 3 25 25 H 1.08001 * 119.77408 * 359.97438 * 7 6 5 26 26 H 1.08001 * 119.84665 * 179.97438 * 8 7 6 27 27 H 1.07996 * 120.07333 * 179.72014 * 9 8 7 28 28 H 0.97007 * 120.00048 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.15361 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0538 0.0000 4 6 3.5467 0.5728 -0.0006 5 8 4.6872 1.3065 -0.0013 6 6 5.8690 0.6488 0.1334 7 6 7.0685 1.3378 -0.0191 8 6 8.2788 0.6779 0.1154 9 6 8.3081 -0.6694 0.3970 10 6 7.1027 -1.3776 0.5591 11 6 7.1239 -2.7604 0.8534 12 1 6.3206 -3.2037 1.4232 13 6 8.1856 -3.5548 0.4063 14 7 8.3487 -4.7603 0.8877 15 14 9.3702 -2.8939 -0.8780 16 1 10.5601 -2.3159 -0.2031 17 1 9.7971 -3.9992 -1.7732 18 1 8.6953 -1.8411 -1.6788 19 6 5.8770 -0.7020 0.4210 20 7 3.4644 -0.7293 -0.0061 21 8 2.3016 -1.0746 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 7.0555 2.3939 -0.2447 26 1 9.2040 1.2219 -0.0053 27 1 9.2540 -1.1811 0.4966 28 1 9.0845 -5.3110 0.5774 29 1 4.9463 -1.2370 0.5394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = 87.109037 kcal Electronic energy + Delta-G solvation = -17070.767815 eV Core-core repulsion = 14157.199088 eV Total energy + Delta-G solvation = -2913.568726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.34122 -39.84723 -37.09536 -35.35724 -33.61779 -32.91254 -30.52321 -29.52532 -28.64600 -25.48998 -24.08580 -23.13271 -21.12969 -20.77132 -18.51188 -18.12786 -17.51268 -16.54270 -15.67361 -15.42768 -14.98810 -14.65093 -14.24296 -13.68516 -13.55332 -13.13548 -12.79304 -12.58874 -12.15384 -11.94375 -11.63634 -11.29719 -11.16315 -10.83810 -10.47747 -10.28171 -9.89638 -9.69769 -9.26587 -9.23164 -7.85040 -7.41984 -7.01510 -4.60419 1.29592 2.17218 2.47063 2.54532 2.74178 2.96034 3.05748 3.17905 3.27913 3.92657 4.20845 4.39304 4.52732 5.08934 5.10809 5.29060 5.34823 5.71266 5.89203 5.93391 6.09126 6.33555 6.44091 6.66734 6.92127 7.06323 7.35570 7.46766 7.70336 7.75694 8.04129 8.25003 8.42641 8.57142 8.70109 10.00271 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.006937 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.842566 B = 4035.456164 C = 4780.041882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.186 3.814 3 N -0.479 5.479 4 C 0.359 3.641 5 O -0.208 6.208 6 C 0.112 3.888 7 C -0.247 4.247 8 C -0.053 4.053 9 C -0.250 4.250 10 C 0.111 3.889 11 C -0.434 4.434 12 H 0.093 0.907 13 C 0.082 3.918 14 N -0.805 5.805 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.291 1.291 18 H -0.241 1.241 19 C -0.274 4.274 20 N -0.384 5.384 21 O 0.069 5.931 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.287 0.713 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 5.798 -2.506 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.034 4.034 3 N -0.222 5.222 4 C 0.053 3.947 5 O -0.107 6.107 6 C 0.070 3.930 7 C -0.267 4.267 8 C -0.072 4.072 9 C -0.269 4.269 10 C 0.108 3.892 11 C -0.462 4.462 12 H 0.111 0.889 13 C -0.137 4.137 14 N -0.428 5.428 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.219 1.219 18 H -0.164 1.164 19 C -0.295 4.295 20 N -0.115 5.115 21 O 0.018 5.982 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.688 5.745 -2.491 11.535 hybrid contribution 0.667 0.061 -0.431 0.796 sum -9.021 5.805 -2.922 11.118 Atomic orbital electron populations 1.20374 0.80058 1.05843 1.05372 1.28616 0.98670 0.80774 0.95355 1.71707 0.97846 1.28689 1.23954 1.23543 0.87592 0.84500 0.99064 1.84270 1.09882 1.32712 1.83862 1.18957 0.80753 0.92187 1.01107 1.19565 0.88852 0.99106 1.19210 1.20350 0.95382 0.94226 0.97207 1.21064 0.97453 0.94317 1.14113 1.17544 0.90012 0.93698 0.87975 1.19520 1.06250 0.91416 1.29025 0.88928 1.26199 0.96823 0.94498 0.96213 1.69654 1.28194 1.09142 1.35856 0.86266 0.79887 0.78765 0.80875 1.19606 1.21898 1.16401 1.22458 1.00698 0.92714 1.13596 1.75471 0.95675 1.13123 1.27265 1.85421 1.11471 1.35131 1.66151 0.88036 0.88221 0.87857 0.87505 0.87419 0.87872 0.90242 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.01 15 2 C 0.19 2.47 8.50 -13.00 -0.11 2.36 15 3 N -0.48 -8.26 11.57 -13.61 -0.16 -8.42 15 4 C 0.36 7.43 8.80 -90.53 -0.80 6.63 15 5 O -0.21 -4.67 10.12 -2.77 -0.03 -4.70 15 6 C 0.11 2.68 6.65 -39.28 -0.26 2.42 15 7 C -0.25 -5.52 9.99 -39.14 -0.39 -5.91 15 8 C -0.05 -1.18 10.02 -39.69 -0.40 -1.58 15 9 C -0.25 -6.16 6.93 -38.85 -0.27 -6.43 15 10 C 0.11 2.95 5.17 -106.85 -0.55 2.40 15 11 C -0.43 -12.06 9.61 -37.74 -0.36 -12.43 15 12 H 0.09 2.70 8.06 -52.48 -0.42 2.28 15 13 C 0.08 2.18 5.46 -17.35 -0.09 2.08 15 14 N -0.80 -21.53 13.93 55.55 0.77 -20.76 15 15 Si 0.92 21.02 24.38 -169.99 -4.14 16.88 15 16 H -0.27 -5.93 6.77 56.52 0.38 -5.55 15 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 18 H -0.24 -5.71 6.52 56.52 0.37 -5.34 15 19 C -0.27 -7.00 8.67 -38.72 -0.34 -7.34 15 20 N -0.38 -7.90 8.04 27.83 0.22 -7.68 15 21 O 0.07 1.13 11.30 18.09 0.20 1.33 15 22 H 0.10 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.11 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.11 1.99 8.06 -52.49 -0.42 1.57 15 27 H 0.10 2.48 4.30 -52.49 -0.23 2.25 15 28 H 0.29 6.92 8.30 -40.82 -0.34 6.58 15 29 H 0.16 3.99 4.32 -81.00 -0.35 3.64 15 LS Contribution 255.56 15.07 3.85 3.85 Total: -1.00 -31.31 255.56 -4.77 -36.08 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.30 Total: 1.20 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.19 Total: -17.78 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.84 Total: -36.85 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: 0.18 Total: -3.37 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.31 -4.77 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.185 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds