Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31069 * 126.48570 * 2 1 4 4 C 1.34900 * 105.59713 * 180.02562 * 3 2 1 5 5 O 1.35613 * 126.36006 * 179.97438 * 4 3 2 6 6 C 1.35913 * 117.99917 * 173.52914 * 5 4 3 7 7 C 1.39166 * 119.93766 * 172.43889 * 6 5 4 8 8 C 1.38509 * 120.44429 * 180.02562 * 7 6 5 9 9 C 1.37673 * 120.30997 * 0.23871 * 8 7 6 10 10 C 1.40735 * 119.85169 * 359.51348 * 9 8 7 11 11 C 1.41398 * 120.21418 * 180.23609 * 10 9 8 12 12 H 1.08005 * 120.00269 * 150.70234 * 11 10 9 13 13 C 1.39935 * 120.00314 * 330.70304 * 11 10 9 14 14 N 1.30824 * 120.00408 * 166.61040 * 13 11 10 15 15 Si 1.86801 * 119.99693 * 346.60908 * 13 11 10 16 16 H 1.48502 * 109.47103 * 95.27803 * 15 13 11 17 17 H 1.48500 * 109.47422 * 215.27997 * 15 13 11 18 18 H 1.48502 * 109.47297 * 335.27934 * 15 13 11 19 19 C 1.38110 * 119.93035 * 352.46458 * 6 5 4 20 20 N 1.30469 * 107.27336 * 0.24098 * 4 3 2 21 21 O 1.21300 * 110.15216 * 359.58241 * 20 4 3 22 22 H 1.09001 * 109.47358 * 89.99744 * 1 2 3 23 23 H 1.09001 * 109.47000 * 210.00205 * 1 2 3 24 24 H 1.09001 * 109.46991 * 329.99430 * 1 2 3 25 25 H 1.08001 * 119.77408 * 359.97438 * 7 6 5 26 26 H 1.08001 * 119.84665 * 179.97438 * 8 7 6 27 27 H 1.07996 * 120.07333 * 179.72014 * 9 8 7 28 28 H 0.97007 * 120.00048 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.15361 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0538 0.0000 4 6 3.5467 0.5728 -0.0006 5 8 4.6872 1.3065 -0.0013 6 6 5.8690 0.6488 0.1334 7 6 7.0685 1.3378 -0.0191 8 6 8.2788 0.6779 0.1154 9 6 8.3081 -0.6694 0.3970 10 6 7.1027 -1.3776 0.5591 11 6 7.1239 -2.7604 0.8534 12 1 6.3206 -3.2037 1.4232 13 6 8.1856 -3.5548 0.4063 14 7 8.3487 -4.7603 0.8877 15 14 9.3702 -2.8939 -0.8780 16 1 10.5601 -2.3159 -0.2031 17 1 9.7971 -3.9992 -1.7732 18 1 8.6953 -1.8411 -1.6788 19 6 5.8770 -0.7020 0.4210 20 7 3.4644 -0.7293 -0.0061 21 8 2.3016 -1.0746 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 7.0555 2.3939 -0.2447 26 1 9.2040 1.2219 -0.0053 27 1 9.2540 -1.1811 0.4966 28 1 9.0845 -5.3110 0.5774 29 1 4.9463 -1.2370 0.5394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = 62.196454 kcal Electronic energy + Delta-G solvation = -17071.848105 eV Core-core repulsion = 14157.199088 eV Total energy + Delta-G solvation = -2914.649017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.75474 -41.56663 -38.91248 -36.70525 -35.52875 -34.20742 -32.38867 -31.22692 -29.73715 -27.40113 -25.69404 -24.60433 -22.78624 -22.53520 -20.15565 -19.56064 -19.12876 -18.36579 -17.42231 -17.18958 -16.63261 -16.24532 -15.54600 -15.39400 -14.70685 -14.44044 -14.17743 -14.08299 -13.79630 -13.43893 -13.19684 -12.84100 -12.73722 -12.61555 -12.14616 -12.00641 -11.69993 -11.45949 -11.09210 -10.79674 -9.74990 -9.25896 -8.97976 -6.65916 0.03260 0.49899 0.61594 0.99140 1.13951 1.22590 1.37473 1.45938 1.92847 2.07528 2.46859 2.83769 3.20714 3.32757 4.19157 4.20995 4.31602 4.45816 4.50668 4.67705 4.69939 4.82061 4.82979 5.09405 5.15730 5.21279 5.51504 5.61051 5.76458 5.89685 6.16928 6.24899 6.57526 6.67962 7.12186 8.10192 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.006937 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.842566 B = 4035.456164 C = 4780.041882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.213 3.787 3 N -0.499 5.499 4 C 0.334 3.666 5 O -0.214 6.214 6 C 0.105 3.895 7 C -0.235 4.235 8 C -0.047 4.047 9 C -0.262 4.262 10 C 0.094 3.906 11 C -0.474 4.474 12 H 0.052 0.948 13 C 0.046 3.954 14 N -0.843 5.843 15 Si 0.971 3.029 16 H -0.247 1.247 17 H -0.277 1.277 18 H -0.252 1.252 19 C -0.298 4.298 20 N -0.418 5.418 21 O 0.071 5.929 22 H 0.131 0.869 23 H 0.128 0.872 24 H 0.122 0.878 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.298 0.702 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 7.804 -3.625 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.005 4.005 3 N -0.242 5.242 4 C 0.028 3.972 5 O -0.115 6.115 6 C 0.063 3.937 7 C -0.254 4.254 8 C -0.065 4.065 9 C -0.281 4.281 10 C 0.091 3.909 11 C -0.503 4.503 12 H 0.071 0.929 13 C -0.169 4.169 14 N -0.469 5.469 15 Si 0.794 3.206 16 H -0.172 1.172 17 H -0.204 1.204 18 H -0.176 1.176 19 C -0.319 4.319 20 N -0.149 5.149 21 O 0.018 5.982 22 H 0.149 0.851 23 H 0.147 0.853 24 H 0.140 0.860 25 H 0.158 0.842 26 H 0.173 0.827 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.054 7.758 -3.595 13.199 hybrid contribution 0.462 -0.416 -0.066 0.625 sum -9.593 7.342 -3.661 12.622 Atomic orbital electron populations 1.20942 0.74643 1.08137 1.07828 1.30070 1.00584 0.78737 0.91118 1.71758 0.96675 1.30007 1.25725 1.23854 0.87972 0.84909 1.00483 1.84201 1.10114 1.32947 1.84202 1.19190 0.82162 0.91786 1.00573 1.20116 0.88221 1.00671 1.16433 1.20858 0.97251 0.93284 0.95073 1.21262 0.96829 0.95637 1.14356 1.17705 0.91399 0.93318 0.88473 1.19452 1.06608 0.92792 1.31471 0.92940 1.26908 0.97957 0.94550 0.97518 1.69674 1.29587 1.10218 1.37389 0.85428 0.78370 0.78325 0.78500 1.17203 1.20360 1.17636 1.22616 1.00643 0.93984 1.14619 1.75385 0.97841 1.13526 1.28148 1.85357 1.10698 1.35799 1.66303 0.85075 0.85326 0.85984 0.84165 0.82670 0.87208 0.89175 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.23 0.75 0.25 15 2 C 0.21 5.29 8.50 88.36 0.75 6.04 15 3 N -0.50 -16.81 11.57 -426.07 -4.93 -21.73 15 4 C 0.33 13.95 8.80 180.32 1.59 15.54 15 5 O -0.21 -9.64 10.12 -32.83 -0.33 -9.98 15 6 C 0.11 5.01 6.65 22.46 0.15 5.16 15 7 C -0.23 -9.84 9.99 22.56 0.23 -9.62 15 8 C -0.05 -1.92 10.02 22.20 0.22 -1.69 15 9 C -0.26 -12.58 6.93 22.75 0.16 -12.42 15 10 C 0.09 5.12 5.17 -21.31 -0.11 5.01 15 11 C -0.47 -27.91 9.61 23.46 0.23 -27.68 15 12 H 0.05 3.36 8.06 -2.91 -0.02 3.33 15 13 C 0.05 2.51 5.46 85.25 0.47 2.98 15 14 N -0.84 -46.72 13.93 21.82 0.30 -46.42 15 15 Si 0.97 43.01 24.38 68.60 1.67 44.68 15 16 H -0.25 -9.98 6.77 99.48 0.67 -9.31 15 17 H -0.28 -11.48 7.11 99.48 0.71 -10.77 15 18 H -0.25 -11.56 6.52 99.48 0.65 -10.92 15 19 C -0.30 -15.71 8.67 22.83 0.20 -15.51 15 20 N -0.42 -17.68 8.04 -183.17 -1.47 -19.16 15 21 O 0.07 2.31 11.30 74.81 0.85 3.16 15 22 H 0.13 0.55 8.14 -2.39 -0.02 0.53 15 23 H 0.13 0.49 8.14 -2.39 -0.02 0.47 15 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 15 25 H 0.14 4.93 8.06 -2.91 -0.02 4.91 15 26 H 0.16 4.87 8.06 -2.91 -0.02 4.85 15 27 H 0.11 5.07 4.30 -2.91 -0.01 5.06 15 28 H 0.30 14.65 8.30 -92.70 -0.77 13.88 15 29 H 0.15 8.12 4.32 -59.22 -0.26 7.87 15 Total: -1.00 -72.33 255.56 1.57 -70.76 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.86 Total: 10.62 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.62 Total: -31.94 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -6.10 Total: -87.31 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.51 Total: -6.82 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.68 kcal Total: -72.33 1.57 -70.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.959 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds