Wall clock time and date at job start Mon Mar 30 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48506 * 109.47294 * 239.99787 * 3 2 1 5 5 H 1.48498 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47070 * 120.00267 * 3 2 1 7 7 C 1.37878 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.38253 * 119.98707 * 265.27014 * 11 10 9 13 13 C 1.38364 * 120.09315 * 180.31966 * 12 11 10 14 14 F 1.35099 * 119.97722 * 179.70293 * 13 12 11 15 15 C 1.38671 * 120.05256 * 359.68447 * 13 12 11 16 16 F 1.35103 * 120.01935 * 180.02562 * 15 13 12 17 17 C 1.38468 * 119.96803 * 0.02562 * 15 13 12 18 18 F 1.35099 * 120.04684 * 179.97438 * 17 15 13 19 19 C 1.38621 * 119.98753 * 84.99665 * 11 10 9 20 20 O 1.35995 * 120.02642 * 359.97438 * 19 11 10 21 21 H 0.97004 * 120.00325 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47477 * 59.99695 * 9 7 2 23 23 H 1.09008 * 109.46942 * 300.00251 * 9 7 2 24 24 H 1.08999 * 109.47259 * 59.99312 * 10 9 7 25 25 H 1.08997 * 109.46653 * 299.99756 * 10 9 7 26 26 H 1.08007 * 119.95279 * 0.02773 * 12 11 10 27 27 H 0.96700 * 114.00111 * 269.72719 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 6 1.2311 -5.6151 1.1912 13 6 0.5452 -6.8168 1.1927 14 9 0.2972 -7.4509 2.3595 15 6 0.1118 -7.3705 -0.0025 16 9 -0.5583 -8.5436 -0.0002 17 6 0.3663 -6.7206 -1.1984 18 9 -0.0548 -7.2589 -2.3638 19 6 1.0551 -5.5146 -1.1983 20 8 1.3060 -4.8742 -2.3715 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5564 -0.8919 23 1 0.6239 -2.5575 0.8881 24 1 2.8713 -3.6048 0.8890 25 1 2.8725 -3.6040 -0.8909 26 1 1.5676 -5.1850 2.1231 27 1 0.6143 -4.2523 -2.6359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260349353.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:26 Heat of formation + Delta-G solvation = -168.088351 kcal Electronic energy + Delta-G solvation = -17314.288737 eV Core-core repulsion = 13815.504330 eV Total energy + Delta-G solvation = -3498.784407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.68067 -49.09407 -48.37104 -39.66873 -36.44446 -34.12548 -32.10553 -29.71996 -28.75993 -25.33248 -23.19421 -22.56204 -20.68939 -18.75256 -18.09854 -17.80322 -16.88426 -16.59246 -16.36824 -15.86467 -15.43659 -14.95552 -14.68419 -14.56461 -14.30631 -13.93552 -13.75221 -12.80296 -12.63872 -12.33564 -11.81039 -11.73996 -11.17126 -10.99000 -10.73269 -10.62704 -10.05199 -9.79782 -9.29712 -8.77497 -8.47639 -8.42778 -6.12671 -4.16448 0.72642 0.77246 3.07912 3.26837 3.32080 3.34132 3.35340 3.97712 4.20199 4.35742 4.36635 4.64614 4.67671 5.23796 5.37119 5.64405 5.73169 5.86204 5.88273 6.40760 6.46883 6.53859 6.80290 7.45155 7.55577 7.63902 7.84430 8.23648 8.89251 9.48885 10.98208 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.005621 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.614383 B = 4980.296789 C = 5433.765348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.033 4.033 12 C -0.122 4.122 13 C 0.090 3.910 14 F -0.123 7.123 15 C 0.025 3.975 16 F -0.122 7.122 17 C 0.069 3.931 18 F -0.118 7.118 19 C 0.096 3.904 20 O -0.475 6.475 21 H 0.263 0.737 22 H 0.016 0.984 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.158 0.842 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -11.593 -0.036 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.117 4.117 11 C -0.034 4.034 12 C -0.141 4.141 13 C 0.070 3.930 14 F -0.102 7.102 15 C 0.004 3.996 16 F -0.101 7.101 17 C 0.048 3.952 18 F -0.097 7.097 19 C 0.050 3.950 20 O -0.286 6.286 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.176 0.824 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.116 -11.887 -0.047 11.940 hybrid contribution -0.401 0.711 -0.045 0.817 sum 0.715 -11.177 -0.092 11.200 Atomic orbital electron populations 1.69937 1.06088 1.27012 1.50229 1.25003 0.94853 0.99341 0.95026 0.86623 0.79575 0.82897 0.78730 1.20131 1.21270 1.20164 1.21133 0.93121 0.90606 1.51448 0.92402 1.19069 0.93533 0.90420 0.97535 1.20915 0.98621 0.89192 1.02989 1.20590 0.95753 0.97223 0.89866 1.21037 0.99841 0.92860 1.00392 1.17321 1.02092 0.93621 0.79969 1.91535 1.92475 1.81266 1.44894 1.17272 1.03612 0.86294 0.92397 1.91524 1.77870 1.43582 1.97089 1.17752 1.01555 0.95269 0.80627 1.91523 1.87974 1.85307 1.44849 1.18012 0.98573 0.91034 0.87412 1.84793 1.49102 1.59507 1.35229 0.92760 0.96571 0.96193 0.91031 0.90309 0.82437 0.73943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.53 -13.68 9.11 -34.44 -0.31 -13.99 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.03 0.72 4.95 -27.88 -0.14 0.58 15 10 C -0.08 -1.44 5.00 -27.89 -0.14 -1.58 15 11 C -0.03 -0.53 5.15 -104.48 -0.54 -1.06 15 12 C -0.12 -1.74 9.65 -39.53 -0.38 -2.12 15 13 C 0.09 1.30 7.30 -39.38 -0.29 1.01 15 14 F -0.12 -1.76 17.18 2.25 0.04 -1.72 15 15 C 0.03 0.38 7.31 -39.34 -0.29 0.09 15 16 F -0.12 -1.87 17.09 2.25 0.04 -1.83 15 17 C 0.07 1.05 7.31 -39.26 -0.29 0.77 15 18 F -0.12 -1.84 17.02 2.25 0.04 -1.80 15 19 C 0.10 1.50 6.68 -39.20 -0.26 1.24 15 20 O -0.47 -7.22 12.50 -19.72 -0.25 -7.46 15 21 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 23 H 0.02 0.49 8.14 -51.92 -0.42 0.06 15 24 H 0.07 1.21 8.05 -51.93 -0.42 0.80 15 25 H 0.08 1.43 7.69 -51.93 -0.40 1.03 15 26 H 0.16 1.96 8.06 -52.48 -0.42 1.54 15 27 H 0.40 4.92 9.06 45.56 0.41 5.34 15 LS Contribution 261.06 15.07 3.93 3.93 Total: -1.00 -28.41 261.06 -4.43 -32.83 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -1.21 Total: -1.36 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.73 Total: -13.55 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.74 Total: -24.59 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.25 Total: -7.46 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.12 Total: -5.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.41 -4.43 -32.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349353.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.257 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds