Wall clock time and date at job start Mon Mar 30 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31069 * 126.47866 * 2 1 4 4 C 1.34902 * 105.59261 * 180.02562 * 3 2 1 5 5 O 1.35606 * 126.36285 * 179.97438 * 4 3 2 6 6 C 1.35640 * 118.00152 * 174.13743 * 5 4 3 7 7 C 1.38474 * 120.26573 * 351.89260 * 6 5 4 8 8 C 1.38292 * 120.04922 * 179.74366 * 7 6 5 9 9 C 1.38827 * 120.59139 * 0.56014 * 8 7 6 10 10 C 1.36481 * 120.54617 * 359.69877 * 9 8 7 11 11 C 1.40733 * 119.92674 * 0.02562 * 10 9 8 12 12 C 1.41140 * 120.28915 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00421 * 144.37355 * 12 11 10 14 14 C 1.39940 * 119.99755 * 324.36667 * 12 11 10 15 15 N 1.30860 * 119.99953 * 329.18213 * 14 12 11 16 16 Si 1.86801 * 119.99892 * 149.18249 * 14 12 11 17 17 H 1.48500 * 109.46971 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47255 * 120.00179 * 16 14 12 19 19 H 1.48494 * 109.47112 * 240.00224 * 16 14 12 20 20 N 1.30480 * 107.27382 * 0.23988 * 4 3 2 21 21 O 1.21296 * 110.15122 * 359.57939 * 20 4 3 22 22 H 1.09009 * 109.46872 * 90.00233 * 1 2 3 23 23 H 1.08994 * 109.47255 * 209.99848 * 1 2 3 24 24 H 1.09001 * 109.47296 * 330.00398 * 1 2 3 25 25 H 1.08008 * 119.97416 * 0.02562 * 7 6 5 26 26 H 1.07997 * 119.70038 * 180.27537 * 8 7 6 27 27 H 1.08000 * 119.72486 * 179.71837 * 9 8 7 28 28 H 1.07995 * 120.03838 * 180.02562 * 10 9 8 29 29 H 0.97003 * 119.99624 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2862 1.0539 0.0000 4 6 3.5466 0.5730 -0.0006 5 8 4.6871 1.3066 -0.0013 6 6 5.8673 0.6491 0.1205 7 6 5.8852 -0.7053 0.4082 8 6 7.0909 -1.3722 0.5262 9 6 8.2919 -0.6936 0.3700 10 6 8.3026 0.6424 0.0913 11 6 7.0885 1.3421 -0.0392 12 6 7.0906 2.7237 -0.3279 13 1 6.3244 3.1440 -0.9624 14 6 8.0855 3.5489 0.2082 15 7 8.6162 3.2640 1.3699 16 14 8.6560 5.0573 -0.7345 17 1 7.9043 5.1567 -2.0113 18 1 8.4087 6.2736 0.0809 19 1 10.1082 4.9412 -1.0223 20 7 3.4644 -0.7292 -0.0061 21 8 2.3016 -1.0746 -0.0005 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 4.9568 -1.2421 0.5361 26 1 7.0983 -2.4295 0.7463 27 1 9.2255 -1.2274 0.4696 28 1 9.2416 1.1621 -0.0289 29 1 9.3061 3.8359 1.7414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260363406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:06 Heat of formation + Delta-G solvation = 84.588761 kcal Electronic energy + Delta-G solvation = -17081.542862 eV Core-core repulsion = 14167.864849 eV Total energy + Delta-G solvation = -2913.678014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.14751 -39.44688 -36.74500 -35.13699 -33.72681 -32.74775 -29.99841 -29.26916 -28.44875 -25.34743 -24.01630 -22.73176 -21.27262 -20.36204 -18.01515 -17.89165 -17.54953 -16.61082 -15.39931 -15.08227 -14.56042 -14.35916 -14.32332 -13.47176 -13.43898 -12.95116 -12.77825 -12.27793 -11.94329 -11.67266 -11.41637 -11.21807 -11.07982 -10.70106 -10.55652 -10.45310 -9.80201 -9.65790 -9.24106 -9.02498 -7.61822 -7.26507 -6.88790 -4.40363 1.42301 2.41437 2.68696 2.90709 3.00734 3.06830 3.08335 3.11192 3.16609 3.91803 4.39873 4.47044 4.77044 5.16114 5.17586 5.38158 5.48656 5.86447 6.07217 6.18257 6.32279 6.39354 6.76344 6.98405 7.12260 7.22427 7.52855 7.60880 7.88759 8.06004 8.16322 8.46514 8.60106 8.70186 8.86869 10.05604 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.006935 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.690631 B = 4036.373630 C = 4928.495518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.184 3.816 3 N -0.479 5.479 4 C 0.367 3.633 5 O -0.178 6.178 6 C -0.043 4.043 7 C -0.150 4.150 8 C -0.220 4.220 9 C -0.104 4.104 10 C -0.156 4.156 11 C 0.133 3.867 12 C -0.470 4.470 13 H 0.087 0.913 14 C 0.089 3.911 15 N -0.775 5.775 16 Si 0.899 3.101 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.270 1.270 20 N -0.413 5.413 21 O 0.055 5.945 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 -4.408 -1.703 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.036 4.036 3 N -0.222 5.222 4 C 0.062 3.938 5 O -0.075 6.075 6 C -0.086 4.086 7 C -0.169 4.169 8 C -0.239 4.239 9 C -0.123 4.123 10 C -0.175 4.175 11 C 0.130 3.870 12 C -0.498 4.498 13 H 0.105 0.895 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.722 3.278 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.195 1.195 20 N -0.151 5.151 21 O 0.009 5.991 22 H 0.118 0.882 23 H 0.115 0.885 24 H 0.121 0.879 25 H 0.165 0.835 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.299 -4.066 -1.537 10.265 hybrid contribution 0.398 0.618 -0.214 0.765 sum -8.901 -3.448 -1.751 9.705 Atomic orbital electron populations 1.20340 0.80299 1.05666 1.05225 1.28580 0.98571 0.80948 0.95518 1.71728 0.98159 1.28523 1.23823 1.23815 0.88353 0.84319 0.97310 1.84339 1.09106 1.31056 1.83006 1.19342 0.81608 0.92418 1.15197 1.22044 0.99982 0.93220 1.01631 1.20216 0.91880 0.98226 1.13609 1.20483 0.96434 0.94956 1.00442 1.20581 0.96585 0.92896 1.07483 1.16911 0.86987 0.93439 0.89690 1.19346 1.10853 0.92067 1.27552 0.89515 1.25842 0.94402 0.99478 0.93445 1.69922 1.20143 1.37017 1.12764 0.86422 0.79357 0.80623 0.81399 1.18055 1.19882 1.19469 1.75179 0.95781 1.13657 1.30503 1.85319 1.11548 1.35114 1.67155 0.88185 0.88481 0.87902 0.83453 0.88593 0.88713 0.87370 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 15 2 C 0.18 2.62 8.50 -13.00 -0.11 2.51 15 3 N -0.48 -9.18 11.57 -13.61 -0.16 -9.34 15 4 C 0.37 8.29 8.81 -90.52 -0.80 7.49 15 5 O -0.18 -4.68 9.55 -1.90 -0.02 -4.70 15 6 C -0.04 -1.16 6.69 -38.32 -0.26 -1.41 15 7 C -0.15 -3.71 8.92 -39.47 -0.35 -4.06 15 8 C -0.22 -5.13 10.04 -39.34 -0.39 -5.53 15 9 C -0.10 -2.46 9.97 -40.00 -0.40 -2.85 15 10 C -0.16 -4.04 8.80 -39.27 -0.35 -4.39 15 11 C 0.13 3.68 5.40 -106.68 -0.58 3.11 15 12 C -0.47 -12.98 8.47 -37.84 -0.32 -13.30 15 13 H 0.09 2.40 7.95 -52.49 -0.42 1.99 15 14 C 0.09 2.29 4.75 -17.33 -0.08 2.20 15 15 N -0.78 -20.32 12.64 55.55 0.70 -19.62 15 16 Si 0.90 18.85 29.65 -169.99 -5.04 13.81 15 17 H -0.26 -5.41 7.11 56.52 0.40 -5.00 15 18 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 20 N -0.41 -8.52 8.06 27.84 0.22 -8.30 15 21 O 0.06 0.91 11.30 18.09 0.20 1.11 15 22 H 0.10 0.52 8.14 -51.92 -0.42 0.09 15 23 H 0.10 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.15 3.47 4.37 -78.67 -0.34 3.12 15 26 H 0.10 1.96 8.06 -52.49 -0.42 1.54 15 27 H 0.09 1.92 8.06 -52.49 -0.42 1.50 15 28 H 0.11 2.76 7.41 -52.49 -0.39 2.37 15 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 15 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -31.69 263.51 -5.77 -37.46 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -2.40 Total: 1.85 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -3.26 Total: -16.25 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.77 Total: -37.26 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.19 Total: -3.59 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.04 Total: 13.81 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.69 -5.77 -37.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.048 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds