Wall clock time and date at job start Mon Mar 30 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31069 * 126.47866 * 2 1 4 4 C 1.34902 * 105.59261 * 180.02562 * 3 2 1 5 5 O 1.35606 * 126.36285 * 179.97438 * 4 3 2 6 6 C 1.35640 * 118.00152 * 174.13743 * 5 4 3 7 7 C 1.38474 * 120.26573 * 351.89260 * 6 5 4 8 8 C 1.38292 * 120.04922 * 179.74366 * 7 6 5 9 9 C 1.38827 * 120.59139 * 0.56014 * 8 7 6 10 10 C 1.36481 * 120.54617 * 359.69877 * 9 8 7 11 11 C 1.40733 * 119.92674 * 0.02562 * 10 9 8 12 12 C 1.41140 * 120.28915 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00421 * 144.37355 * 12 11 10 14 14 C 1.39940 * 119.99755 * 324.36667 * 12 11 10 15 15 N 1.30860 * 119.99953 * 329.18213 * 14 12 11 16 16 Si 1.86801 * 119.99892 * 149.18249 * 14 12 11 17 17 H 1.48500 * 109.46971 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47255 * 120.00179 * 16 14 12 19 19 H 1.48494 * 109.47112 * 240.00224 * 16 14 12 20 20 N 1.30480 * 107.27382 * 0.23988 * 4 3 2 21 21 O 1.21296 * 110.15122 * 359.57939 * 20 4 3 22 22 H 1.09009 * 109.46872 * 90.00233 * 1 2 3 23 23 H 1.08994 * 109.47255 * 209.99848 * 1 2 3 24 24 H 1.09001 * 109.47296 * 330.00398 * 1 2 3 25 25 H 1.08008 * 119.97416 * 0.02562 * 7 6 5 26 26 H 1.07997 * 119.70038 * 180.27537 * 8 7 6 27 27 H 1.08000 * 119.72486 * 179.71837 * 9 8 7 28 28 H 1.07995 * 120.03838 * 180.02562 * 10 9 8 29 29 H 0.97003 * 119.99624 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2862 1.0539 0.0000 4 6 3.5466 0.5730 -0.0006 5 8 4.6871 1.3066 -0.0013 6 6 5.8673 0.6491 0.1205 7 6 5.8852 -0.7053 0.4082 8 6 7.0909 -1.3722 0.5262 9 6 8.2919 -0.6936 0.3700 10 6 8.3026 0.6424 0.0913 11 6 7.0885 1.3421 -0.0392 12 6 7.0906 2.7237 -0.3279 13 1 6.3244 3.1440 -0.9624 14 6 8.0855 3.5489 0.2082 15 7 8.6162 3.2640 1.3699 16 14 8.6560 5.0573 -0.7345 17 1 7.9043 5.1567 -2.0113 18 1 8.4087 6.2736 0.0809 19 1 10.1082 4.9412 -1.0223 20 7 3.4644 -0.7292 -0.0061 21 8 2.3016 -1.0746 -0.0005 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 4.9568 -1.2421 0.5361 26 1 7.0983 -2.4295 0.7463 27 1 9.2255 -1.2274 0.4696 28 1 9.2416 1.1621 -0.0289 29 1 9.3061 3.8359 1.7414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260363406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:06 Heat of formation + Delta-G solvation = 60.528999 kcal Electronic energy + Delta-G solvation = -17082.586172 eV Core-core repulsion = 14167.864849 eV Total energy + Delta-G solvation = -2914.721323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.64123 -41.29770 -38.61002 -36.58327 -35.65586 -34.07982 -31.88766 -31.03457 -29.63307 -27.30648 -25.65619 -24.26974 -23.12843 -22.04457 -19.66661 -19.51914 -19.30333 -18.35819 -17.19129 -16.87105 -16.32664 -16.11598 -15.56540 -15.10520 -14.68296 -14.24271 -14.13100 -13.87317 -13.60586 -13.38521 -12.96329 -12.94448 -12.69496 -12.31804 -12.21283 -12.13837 -11.64644 -11.40592 -11.02243 -10.72154 -9.58284 -9.18767 -8.79565 -6.43460 0.09778 0.67466 0.80196 1.27153 1.29502 1.33931 1.41551 1.50706 1.97531 2.17538 2.54129 2.94127 3.35797 3.40597 4.30868 4.34420 4.43415 4.53018 4.59075 4.71326 4.86023 4.88903 5.05156 5.17083 5.21535 5.35931 5.61528 5.69423 5.94772 6.11214 6.27397 6.50435 6.69493 6.88848 7.21662 8.18714 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.006935 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.690631 B = 4036.373630 C = 4928.495518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.214 3.786 3 N -0.513 5.513 4 C 0.335 3.665 5 O -0.211 6.211 6 C -0.063 4.063 7 C -0.161 4.161 8 C -0.214 4.214 9 C -0.104 4.104 10 C -0.172 4.172 11 C 0.099 3.901 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.053 3.947 15 N -0.809 5.809 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.262 1.262 19 H -0.253 1.253 20 N -0.426 5.426 21 O 0.071 5.929 22 H 0.130 0.870 23 H 0.133 0.867 24 H 0.116 0.884 25 H 0.162 0.838 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 -5.428 -1.789 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.004 4.004 3 N -0.257 5.257 4 C 0.029 3.971 5 O -0.110 6.110 6 C -0.106 4.106 7 C -0.180 4.180 8 C -0.233 4.233 9 C -0.122 4.122 10 C -0.191 4.191 11 C 0.096 3.904 12 C -0.539 4.539 13 H 0.085 0.915 14 C -0.165 4.165 15 N -0.433 5.433 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.187 1.187 19 H -0.177 1.177 20 N -0.161 5.161 21 O 0.021 5.979 22 H 0.148 0.852 23 H 0.152 0.848 24 H 0.134 0.866 25 H 0.178 0.822 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.121 0.879 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.485 -5.099 -1.614 11.770 hybrid contribution 0.488 0.757 -0.151 0.913 sum -9.997 -4.342 -1.765 11.041 Atomic orbital electron populations 1.20918 0.74658 1.08082 1.07732 1.29996 1.00458 0.78795 0.91150 1.71744 0.97319 1.30598 1.26002 1.24078 0.88241 0.85139 0.99599 1.84202 1.10143 1.32667 1.83943 1.19627 0.82019 0.93375 1.15582 1.22370 1.01460 0.92663 1.01508 1.20699 0.91169 0.99900 1.11526 1.20860 0.98242 0.94137 0.98943 1.20665 0.95826 0.94086 1.08565 1.17314 0.88220 0.94123 0.90695 1.19406 1.12341 0.92923 1.29180 0.91518 1.26643 0.93654 1.02398 0.93796 1.69917 1.20820 1.38804 1.13754 0.85303 0.79299 0.76599 0.79395 1.18671 1.18699 1.17705 1.75008 0.97974 1.12930 1.30218 1.85257 1.10592 1.35291 1.66803 0.85214 0.84824 0.86552 0.82213 0.84974 0.85022 0.87871 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 15 2 C 0.21 5.65 8.50 88.36 0.75 6.40 15 3 N -0.51 -19.74 11.57 -426.05 -4.93 -24.67 15 4 C 0.33 15.56 8.81 180.31 1.59 17.14 15 5 O -0.21 -11.75 9.55 -29.73 -0.28 -12.03 15 6 C -0.06 -3.57 6.69 23.09 0.15 -3.42 15 7 C -0.16 -8.06 8.92 22.34 0.20 -7.86 15 8 C -0.21 -9.72 10.04 22.42 0.23 -9.49 15 9 C -0.10 -4.78 9.97 22.00 0.22 -4.56 15 10 C -0.17 -9.12 8.80 22.47 0.20 -8.93 15 11 C 0.10 5.78 5.40 -21.20 -0.11 5.66 15 12 C -0.51 -29.80 8.47 23.40 0.20 -29.60 15 13 H 0.07 4.00 7.95 -2.91 -0.02 3.97 15 14 C 0.05 2.81 4.75 85.25 0.40 3.21 15 15 N -0.81 -43.48 12.64 21.83 0.28 -43.20 15 16 Si 0.97 39.59 29.65 68.60 2.03 41.62 15 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 19 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 20 N -0.43 -17.57 8.06 -183.16 -1.48 -19.04 15 21 O 0.07 2.21 11.30 74.80 0.85 3.06 15 22 H 0.13 0.69 8.14 -2.38 -0.02 0.67 15 23 H 0.13 0.45 8.14 -2.39 -0.02 0.44 15 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 15 25 H 0.16 7.52 4.37 -54.61 -0.24 7.28 15 26 H 0.13 4.98 8.06 -2.91 -0.02 4.96 15 27 H 0.13 5.01 8.06 -2.91 -0.02 4.98 15 28 H 0.10 5.42 7.41 -2.91 -0.02 5.40 15 29 H 0.30 14.02 8.30 -92.71 -0.77 13.25 15 Total: -1.00 -73.91 263.51 2.00 -71.91 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.96 Total: 13.60 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 4.57 Total: -31.24 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -6.13 Total: -86.91 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.56 Total: -8.98 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -73.91 2.00 -71.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.435 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds