Wall clock time and date at job start Mon Mar 30 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30114 * 126.22934 * 2 1 4 4 N 1.28661 * 109.50310 * 179.97438 * 3 2 1 5 5 C 1.30879 * 109.33361 * 0.02562 * 4 3 2 6 6 O 1.35417 * 126.34747 * 179.97438 * 5 4 3 7 7 C 1.35900 * 118.00309 * 6.90528 * 6 5 4 8 8 C 1.39172 * 119.93937 * 189.40985 * 7 6 5 9 9 C 1.38508 * 120.44656 * 180.02562 * 8 7 6 10 10 C 1.37675 * 120.30261 * 359.97438 * 9 8 7 11 11 C 1.40722 * 119.86347 * 0.02562 * 10 9 8 12 12 C 1.41411 * 120.21874 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00342 * 148.82992 * 12 11 10 14 14 C 1.39935 * 119.99560 * 328.81943 * 12 11 10 15 15 N 1.30828 * 119.99980 * 342.62379 * 14 12 11 16 16 Si 1.86801 * 119.99608 * 162.61888 * 14 12 11 17 17 H 1.48494 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46806 * 120.00608 * 16 14 12 19 19 H 1.48499 * 109.47220 * 240.00234 * 16 14 12 20 20 C 1.38118 * 119.92966 * 9.13651 * 7 6 5 21 21 O 1.34518 * 107.29937 * 359.77233 * 5 4 3 22 22 H 1.09005 * 109.47366 * 90.01975 * 1 2 3 23 23 H 1.08999 * 109.47380 * 330.02341 * 1 2 3 24 24 H 1.08998 * 109.47167 * 210.02027 * 1 2 3 25 25 H 1.08003 * 119.77517 * 0.02562 * 8 7 6 26 26 H 1.07997 * 119.84585 * 180.02562 * 9 8 7 27 27 H 1.08010 * 120.06145 * 179.97438 * 10 9 8 28 28 H 0.97000 * 119.99847 * 179.97438 * 15 14 12 29 29 H 1.08000 * 120.15690 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0496 0.0000 4 7 3.5082 0.6793 0.0005 5 6 3.5677 -0.6281 0.0004 6 8 4.6938 -1.3803 0.0003 7 6 5.8860 -0.7442 0.1447 8 6 7.0740 -1.4439 -0.0445 9 6 8.2950 -0.8062 0.1005 10 6 8.3462 0.5288 0.4333 11 6 7.1528 1.2488 0.6277 12 6 7.1967 2.6201 0.9702 13 1 6.4081 3.2830 0.6465 14 6 8.2619 3.1179 1.7289 15 7 9.0245 2.2965 2.4037 16 14 8.5950 4.9553 1.7782 17 1 7.5964 5.6621 0.9365 18 1 8.4931 5.4394 3.1783 19 1 9.9600 5.2251 1.2593 20 6 5.9161 0.5970 0.4734 21 8 2.3029 -1.0862 0.0048 22 1 -0.3634 -0.0004 -1.0277 23 1 -0.3634 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5141 25 1 7.0437 -2.4913 -0.3062 26 1 9.2109 -1.3584 -0.0490 27 1 9.3004 1.0221 0.5458 28 1 9.7632 2.6415 2.9293 29 1 4.9944 1.1416 0.6156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372684.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:11 Heat of formation + Delta-G solvation = 54.389361 kcal Electronic energy + Delta-G solvation = -16942.751804 eV Core-core repulsion = 14027.764247 eV Total energy + Delta-G solvation = -2914.987558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.95901 -39.74925 -36.77332 -35.99532 -33.55629 -32.45183 -30.03511 -28.88178 -27.90657 -25.35445 -23.77887 -22.50871 -21.33620 -20.80058 -18.56402 -17.61118 -17.33852 -16.29263 -15.49941 -15.03121 -14.75115 -14.67032 -14.22064 -13.24008 -13.17641 -13.02975 -12.76294 -12.62238 -12.15919 -11.78570 -11.51942 -11.18801 -11.03489 -10.84142 -10.50708 -10.39565 -9.81986 -9.32025 -9.19150 -8.90703 -7.58940 -7.21847 -6.81722 -4.43153 1.34225 1.49720 2.52310 2.72095 2.90314 3.08746 3.14170 3.16476 3.68788 3.94072 4.47867 4.54789 4.73764 5.12547 5.18117 5.35171 5.52201 5.54007 5.84437 6.17693 6.25113 6.56028 6.83919 6.97446 7.10853 7.25315 7.57739 7.80022 7.84620 8.01028 8.15526 8.50836 8.63674 8.81270 8.86910 10.16525 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.006693 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.911762 B = 4182.416003 C = 5177.680439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.134 3.866 3 N -0.270 5.270 4 N -0.293 5.293 5 C 0.365 3.635 6 O -0.203 6.203 7 C 0.093 3.907 8 C -0.236 4.236 9 C -0.084 4.084 10 C -0.166 4.166 11 C 0.132 3.868 12 C -0.458 4.458 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.794 5.794 16 Si 0.909 3.091 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.271 4.271 21 O -0.223 6.223 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.281 0.719 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 -3.390 -2.680 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.078 4.078 3 N -0.117 5.117 4 N -0.157 5.157 5 C 0.120 3.880 6 O -0.106 6.106 7 C 0.053 3.947 8 C -0.256 4.256 9 C -0.102 4.102 10 C -0.186 4.186 11 C 0.129 3.871 12 C -0.487 4.487 13 H 0.103 0.897 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.733 3.267 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.197 1.197 20 C -0.292 4.292 21 O -0.107 6.107 22 H 0.113 0.887 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.399 -2.507 -2.531 10.051 hybrid contribution 0.076 -0.587 0.223 0.633 sum -9.322 -3.094 -2.308 10.090 Atomic orbital electron populations 1.20244 0.79912 1.05366 1.04858 1.27562 0.96887 0.78976 1.04386 1.74307 0.96574 1.25793 1.15040 1.75344 1.09974 1.05735 1.24637 1.24787 0.81319 0.85768 0.96101 1.84152 1.09591 1.33614 1.83194 1.18875 0.78463 0.93324 1.04022 1.19555 0.88822 0.99106 1.18132 1.20426 0.94665 0.95103 1.00051 1.21329 0.98923 0.93587 1.04762 1.17466 0.89584 0.93195 0.86830 1.19626 1.06395 0.93758 1.28966 0.89744 1.25914 0.94495 1.00476 0.93223 1.69824 1.14475 1.37260 1.20363 0.86246 0.79255 0.82326 0.78873 1.18166 1.19982 1.19684 1.22812 1.01595 0.92506 1.12304 1.84703 1.15083 1.38326 1.72567 0.88731 0.87571 0.89260 0.88073 0.87820 0.86713 0.90808 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.36 10.51 36.01 0.38 0.01 15 2 C 0.13 1.99 8.48 -13.01 -0.11 1.88 15 3 N -0.27 -5.08 12.21 32.58 0.40 -4.68 15 4 N -0.29 -6.40 8.13 29.24 0.24 -6.16 15 5 C 0.37 7.56 9.04 52.36 0.47 8.04 15 6 O -0.20 -4.47 10.11 -25.23 -0.26 -4.73 15 7 C 0.09 2.24 6.64 -39.28 -0.26 1.98 15 8 C -0.24 -5.38 9.99 -39.13 -0.39 -5.77 15 9 C -0.08 -1.93 10.02 -39.69 -0.40 -2.33 15 10 C -0.17 -4.28 8.66 -38.85 -0.34 -4.62 15 11 C 0.13 3.59 5.49 -106.84 -0.59 3.00 15 12 C -0.46 -12.40 9.02 -37.74 -0.34 -12.74 15 13 H 0.08 2.25 7.90 -52.49 -0.41 1.84 15 14 C 0.08 1.94 5.09 -17.34 -0.09 1.86 15 15 N -0.79 -20.54 11.40 55.55 0.63 -19.91 15 16 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 15 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 20 C -0.27 -7.06 8.64 -38.72 -0.33 -7.39 15 21 O -0.22 -3.84 10.89 -18.95 -0.21 -4.05 15 22 H 0.09 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.11 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.10 2.03 8.06 -52.48 -0.42 1.61 15 26 H 0.10 2.04 8.06 -52.49 -0.42 1.62 15 27 H 0.11 2.98 6.65 -52.48 -0.35 2.63 15 28 H 0.28 6.57 8.30 -40.82 -0.34 6.24 15 29 H 0.17 4.30 4.40 -115.86 -0.51 3.79 15 LS Contribution 263.04 15.07 3.96 3.96 Total: -1.00 -30.03 263.04 -4.78 -34.80 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -2.52 Total: 3.02 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.99 Total: -16.08 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 1.27 Total: -30.75 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.46 Total: -8.77 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.03 -4.78 -34.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372684.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.192 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds