Wall clock time and date at job start Mon Mar 30 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30114 * 126.22934 * 2 1 4 4 N 1.28661 * 109.50310 * 179.97438 * 3 2 1 5 5 C 1.30879 * 109.33361 * 0.02562 * 4 3 2 6 6 O 1.35417 * 126.34747 * 179.97438 * 5 4 3 7 7 C 1.35900 * 118.00309 * 6.90528 * 6 5 4 8 8 C 1.39172 * 119.93937 * 189.40985 * 7 6 5 9 9 C 1.38508 * 120.44656 * 180.02562 * 8 7 6 10 10 C 1.37675 * 120.30261 * 359.97438 * 9 8 7 11 11 C 1.40722 * 119.86347 * 0.02562 * 10 9 8 12 12 C 1.41411 * 120.21874 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00342 * 148.82992 * 12 11 10 14 14 C 1.39935 * 119.99560 * 328.81943 * 12 11 10 15 15 N 1.30828 * 119.99980 * 342.62379 * 14 12 11 16 16 Si 1.86801 * 119.99608 * 162.61888 * 14 12 11 17 17 H 1.48494 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46806 * 120.00608 * 16 14 12 19 19 H 1.48499 * 109.47220 * 240.00234 * 16 14 12 20 20 C 1.38118 * 119.92966 * 9.13651 * 7 6 5 21 21 O 1.34518 * 107.29937 * 359.77233 * 5 4 3 22 22 H 1.09005 * 109.47366 * 90.01975 * 1 2 3 23 23 H 1.08999 * 109.47380 * 330.02341 * 1 2 3 24 24 H 1.08998 * 109.47167 * 210.02027 * 1 2 3 25 25 H 1.08003 * 119.77517 * 0.02562 * 8 7 6 26 26 H 1.07997 * 119.84585 * 180.02562 * 9 8 7 27 27 H 1.08010 * 120.06145 * 179.97438 * 10 9 8 28 28 H 0.97000 * 119.99847 * 179.97438 * 15 14 12 29 29 H 1.08000 * 120.15690 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0496 0.0000 4 7 3.5082 0.6793 0.0005 5 6 3.5677 -0.6281 0.0004 6 8 4.6938 -1.3803 0.0003 7 6 5.8860 -0.7442 0.1447 8 6 7.0740 -1.4439 -0.0445 9 6 8.2950 -0.8062 0.1005 10 6 8.3462 0.5288 0.4333 11 6 7.1528 1.2488 0.6277 12 6 7.1967 2.6201 0.9702 13 1 6.4081 3.2830 0.6465 14 6 8.2619 3.1179 1.7289 15 7 9.0245 2.2965 2.4037 16 14 8.5950 4.9553 1.7782 17 1 7.5964 5.6621 0.9365 18 1 8.4931 5.4394 3.1783 19 1 9.9600 5.2251 1.2593 20 6 5.9161 0.5970 0.4734 21 8 2.3029 -1.0862 0.0048 22 1 -0.3634 -0.0004 -1.0277 23 1 -0.3634 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5141 25 1 7.0437 -2.4913 -0.3062 26 1 9.2109 -1.3584 -0.0490 27 1 9.3004 1.0221 0.5458 28 1 9.7632 2.6415 2.9293 29 1 4.9944 1.1416 0.6156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372684.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:11 Heat of formation + Delta-G solvation = 32.273534 kcal Electronic energy + Delta-G solvation = -16943.710819 eV Core-core repulsion = 14027.764247 eV Total energy + Delta-G solvation = -2915.946572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.39966 -41.47055 -38.62188 -37.45369 -35.44993 -33.61145 -31.90535 -30.73403 -29.14507 -27.26059 -25.39797 -23.85964 -23.06917 -22.61484 -20.32558 -19.09387 -19.00807 -18.02386 -17.20516 -16.79338 -16.40038 -16.27419 -15.52707 -15.04517 -14.66433 -14.37341 -13.97934 -13.66775 -13.54790 -13.50116 -13.29646 -12.85955 -12.76642 -12.45177 -12.24581 -12.15519 -11.63420 -11.10007 -11.02954 -10.45675 -9.51412 -9.08657 -8.70583 -6.44097 -0.13135 0.03831 0.82222 0.90158 1.23883 1.38180 1.47023 1.53874 2.21256 2.38990 2.64647 3.10012 3.36061 3.57217 3.83093 4.29900 4.41564 4.46801 4.63454 4.74044 4.79960 4.92397 5.06703 5.10529 5.20149 5.36534 5.68703 5.89252 5.98574 6.05405 6.26570 6.58068 6.85576 6.89439 7.14862 8.30502 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.006693 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.911762 B = 4182.416003 C = 5177.680439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.171 3.829 3 N -0.315 5.315 4 N -0.323 5.323 5 C 0.343 3.657 6 O -0.204 6.204 7 C 0.092 3.908 8 C -0.231 4.231 9 C -0.077 4.077 10 C -0.188 4.188 11 C 0.104 3.896 12 C -0.498 4.498 13 H 0.071 0.929 14 C 0.040 3.960 15 N -0.823 5.823 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.296 4.296 21 O -0.216 6.216 22 H 0.125 0.875 23 H 0.125 0.875 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.105 0.895 28 H 0.291 0.709 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.242 -4.026 -2.883 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.041 4.041 3 N -0.160 5.160 4 N -0.185 5.185 5 C 0.096 3.904 6 O -0.106 6.106 7 C 0.052 3.948 8 C -0.251 4.251 9 C -0.095 4.095 10 C -0.208 4.208 11 C 0.101 3.899 12 C -0.527 4.527 13 H 0.089 0.911 14 C -0.175 4.175 15 N -0.449 5.449 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.182 1.182 20 C -0.317 4.317 21 O -0.100 6.100 22 H 0.143 0.857 23 H 0.143 0.857 24 H 0.137 0.863 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.618 -3.145 -2.737 11.407 hybrid contribution 0.192 -0.523 0.254 0.612 sum -10.426 -3.667 -2.483 11.328 Atomic orbital electron populations 1.20834 0.74535 1.07703 1.07448 1.29167 0.98767 0.77383 0.98743 1.74262 0.95957 1.27226 1.18577 1.75184 1.12015 1.06596 1.24713 1.24697 0.81903 0.85770 0.98014 1.84081 1.09518 1.33328 1.83706 1.19019 0.79878 0.92817 1.03126 1.19996 0.88151 1.00572 1.16365 1.20814 0.96402 0.94182 0.98130 1.21342 0.97988 0.94977 1.06473 1.17808 0.90633 0.93856 0.87591 1.19772 1.07697 0.94158 1.31115 0.91078 1.26709 0.93585 1.05199 0.92045 1.69846 1.14990 1.39367 1.20666 0.85159 0.79324 0.76117 0.79121 1.18588 1.18924 1.18242 1.22925 1.01285 0.93779 1.13687 1.84761 1.13848 1.38964 1.72423 0.85683 0.85696 0.86286 0.84716 0.84088 0.87733 0.89813 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.56 10.51 71.24 0.75 0.19 15 2 C 0.17 4.75 8.48 88.36 0.75 5.50 15 3 N -0.32 -11.83 12.21 -165.32 -2.02 -13.84 15 4 N -0.32 -14.46 8.13 -289.28 -2.35 -16.81 15 5 C 0.34 14.33 9.04 130.38 1.18 15.50 15 6 O -0.20 -8.99 10.11 -8.48 -0.09 -9.08 15 7 C 0.09 4.48 6.64 22.47 0.15 4.63 15 8 C -0.23 -10.25 9.99 22.56 0.23 -10.03 15 9 C -0.08 -3.48 10.02 22.20 0.22 -3.25 15 10 C -0.19 -9.89 8.66 22.74 0.20 -9.69 15 11 C 0.10 5.88 5.49 -21.30 -0.12 5.76 15 12 C -0.50 -28.28 9.02 23.46 0.21 -28.07 15 13 H 0.07 4.05 7.90 -2.91 -0.02 4.03 15 14 C 0.04 2.07 5.09 85.25 0.43 2.50 15 15 N -0.82 -43.42 11.40 21.82 0.25 -43.17 15 16 Si 0.98 39.29 29.59 68.60 2.03 41.32 15 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 20 C -0.30 -16.03 8.64 22.83 0.20 -15.83 15 21 O -0.22 -7.17 10.89 14.01 0.15 -7.01 15 22 H 0.13 0.88 8.14 -2.38 -0.02 0.87 15 23 H 0.12 1.13 8.14 -2.39 -0.02 1.11 15 24 H 0.12 0.81 8.14 -2.39 -0.02 0.79 15 25 H 0.13 5.02 8.06 -2.91 -0.02 5.00 15 26 H 0.14 5.20 8.06 -2.91 -0.02 5.17 15 27 H 0.10 5.60 6.65 -2.91 -0.02 5.58 15 28 H 0.29 13.71 8.30 -92.71 -0.77 12.95 15 29 H 0.16 8.75 4.40 -84.91 -0.37 8.38 15 Total: -1.00 -68.71 263.04 3.00 -65.70 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.83 Total: 15.69 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.20 Total: -32.79 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -4.12 Total: -73.83 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.07 Total: -16.09 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -68.71 3.00 -65.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372684.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.977 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds