Wall clock time and date at job start Mon Mar 30 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00650 * 2 1 4 4 H 1.48498 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46981 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.46823 * 59.99585 * 3 2 1 7 7 C 1.37881 * 119.99354 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47029 * 299.99752 * 9 7 2 11 11 C 1.50707 * 109.46928 * 180.02562 * 9 7 2 12 12 C 1.38241 * 119.98816 * 120.00232 * 11 9 7 13 13 C 1.38215 * 120.01083 * 179.97438 * 12 11 9 14 14 C 1.38349 * 119.98995 * 359.97438 * 13 12 11 15 15 Cl 1.73600 * 120.01610 * 180.02562 * 14 13 12 16 16 C 1.38354 * 119.96929 * 359.97438 * 14 13 12 17 17 C 1.38207 * 119.99096 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47138 * 60.00225 * 9 7 2 19 19 F 1.39896 * 109.47001 * 299.99920 * 18 9 7 20 20 F 1.39895 * 109.47278 * 59.99818 * 18 9 7 21 21 H 0.97008 * 119.99160 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99420 * 0.24790 * 12 11 9 23 23 H 1.07996 * 120.00049 * 180.02562 * 13 12 11 24 24 H 1.08008 * 120.00267 * 179.97438 * 16 14 13 25 25 H 1.08003 * 119.99786 * 179.97438 * 17 16 14 26 26 H 1.08996 * 109.46995 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6238 -2.5566 0.8903 11 6 2.2300 -3.6447 0.0018 12 6 2.2231 -4.5585 1.0391 13 6 3.1206 -5.6096 1.0405 14 6 4.0257 -5.7475 0.0033 15 17 5.1529 -7.0678 0.0040 16 6 4.0314 -4.8332 -1.0351 17 6 3.1335 -3.7825 -1.0355 18 6 0.3717 -2.5804 -1.2490 19 9 -0.5373 -1.5170 -1.2496 20 9 1.1764 -2.5067 -2.3910 21 1 -0.4849 0.8402 -0.0004 22 1 1.5133 -4.4536 1.8463 23 1 3.1148 -6.3236 1.8507 24 1 4.7380 -4.9400 -1.8450 25 1 3.1381 -3.0685 -1.8458 26 1 -0.1730 -3.5245 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385906.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:44 Heat of formation + Delta-G solvation = -73.097531 kcal Electronic energy + Delta-G solvation = -15715.802549 eV Core-core repulsion = 12649.473629 eV Total energy + Delta-G solvation = -3066.328921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.28225 -45.16899 -38.85539 -36.24767 -33.82261 -31.48364 -30.57752 -27.81416 -24.72937 -22.53677 -22.23461 -20.15759 -16.83624 -16.58759 -15.84673 -15.58777 -15.19961 -14.68140 -14.40491 -13.85091 -13.13852 -13.06375 -12.88850 -12.27442 -11.99654 -11.65107 -11.41677 -11.21893 -11.10643 -10.90036 -10.80801 -10.58663 -10.42159 -9.97618 -9.69885 -9.11231 -8.55802 -8.46298 -7.93538 -6.00903 -4.16373 1.65787 1.78100 2.43399 3.26472 3.34721 3.38998 4.13415 4.38392 5.14145 5.23400 5.26782 5.30351 5.56240 5.82716 5.92145 6.07687 6.16336 6.28532 6.43451 6.58219 6.69870 6.89698 7.05496 7.35815 7.46024 7.81458 8.04443 8.77746 9.45416 10.91147 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033433 B = 0.006908 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.305015 B = 4052.541552 C = 4361.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.061 0.939 11 C -0.039 4.039 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.052 4.052 15 Cl -0.095 7.095 16 C -0.117 4.117 17 C -0.093 4.093 18 C 0.267 3.733 19 F -0.158 7.158 20 F -0.223 7.223 21 H 0.258 0.742 22 H 0.127 0.873 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.144 0.856 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -9.155 -0.050 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.014 3.986 10 H 0.078 0.922 11 C -0.039 4.039 12 C -0.131 4.131 13 C -0.136 4.136 14 C -0.078 4.078 15 Cl -0.066 7.066 16 C -0.136 4.136 17 C -0.111 4.111 18 C 0.212 3.788 19 F -0.139 7.139 20 F -0.205 7.205 21 H 0.069 0.931 22 H 0.145 0.855 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.161 0.839 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.639 -9.111 -0.072 9.811 hybrid contribution 0.533 0.807 -0.056 0.969 sum 4.172 -8.304 -0.128 9.294 Atomic orbital electron populations 1.70493 1.05583 1.26076 1.45863 1.25057 0.95036 0.99536 0.94636 0.86404 0.80107 0.83171 0.77594 1.19651 1.20868 1.20951 1.20773 0.93110 0.88284 1.54441 0.91715 1.18935 0.92833 0.92602 0.94254 0.92158 1.20385 0.96208 0.94480 0.92871 1.21083 0.99003 0.93939 0.99033 1.20893 0.95769 0.99247 0.97680 1.20800 0.95845 0.92440 0.98738 1.98319 1.61624 1.48108 1.98593 1.21042 1.00151 0.94735 0.97656 1.21416 0.93585 0.96655 0.99441 1.22307 0.84181 0.87631 0.84694 1.93207 1.67065 1.57431 1.96191 1.92781 1.75716 1.97273 1.54713 0.93094 0.85460 0.85822 0.85771 0.83868 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.33 9.50 55.43 0.53 -22.80 15 2 C 0.06 1.70 5.20 -17.82 -0.09 1.61 15 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.53 -13.78 7.98 -34.44 -0.27 -14.06 15 8 H 0.06 1.71 7.60 -52.48 -0.40 1.31 15 9 C 0.03 0.76 2.36 -92.92 -0.22 0.54 15 10 H 0.06 1.44 7.87 -51.93 -0.41 1.04 15 11 C -0.04 -0.78 4.74 -104.62 -0.50 -1.27 15 12 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 15 13 C -0.12 -1.81 9.83 -39.55 -0.39 -2.20 15 14 C -0.05 -0.82 6.32 -39.50 -0.25 -1.07 15 15 Cl -0.09 -1.30 28.96 -51.86 -1.50 -2.81 15 16 C -0.12 -1.93 9.83 -39.55 -0.39 -2.32 15 17 C -0.09 -1.76 8.37 -39.59 -0.33 -2.09 15 18 C 0.27 6.10 4.83 37.16 0.18 6.28 15 19 F -0.16 -4.13 12.93 2.25 0.03 -4.10 15 20 F -0.22 -5.14 14.45 2.25 0.03 -5.11 15 21 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.13 1.97 7.94 -52.49 -0.42 1.56 15 23 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 24 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 25 H 0.14 2.85 6.38 -52.48 -0.33 2.51 15 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 248.20 15.07 3.74 3.74 Total: -1.00 -27.36 248.20 -6.80 -34.16 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -1.96 Total: -2.16 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.64 Total: -16.89 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.53 Total: -22.80 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.36 -6.80 -34.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385906.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.938 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds