Wall clock time and date at job start Mon Mar 30 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00650 * 2 1 4 4 H 1.48498 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46981 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.46823 * 59.99585 * 3 2 1 7 7 C 1.37881 * 119.99354 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47029 * 299.99752 * 9 7 2 11 11 C 1.50707 * 109.46928 * 180.02562 * 9 7 2 12 12 C 1.38241 * 119.98816 * 120.00232 * 11 9 7 13 13 C 1.38215 * 120.01083 * 179.97438 * 12 11 9 14 14 C 1.38349 * 119.98995 * 359.97438 * 13 12 11 15 15 Cl 1.73600 * 120.01610 * 180.02562 * 14 13 12 16 16 C 1.38354 * 119.96929 * 359.97438 * 14 13 12 17 17 C 1.38207 * 119.99096 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47138 * 60.00225 * 9 7 2 19 19 F 1.39896 * 109.47001 * 299.99920 * 18 9 7 20 20 F 1.39895 * 109.47278 * 59.99818 * 18 9 7 21 21 H 0.97008 * 119.99160 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99420 * 0.24790 * 12 11 9 23 23 H 1.07996 * 120.00049 * 180.02562 * 13 12 11 24 24 H 1.08008 * 120.00267 * 179.97438 * 16 14 13 25 25 H 1.08003 * 119.99786 * 179.97438 * 17 16 14 26 26 H 1.08996 * 109.46995 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6238 -2.5566 0.8903 11 6 2.2300 -3.6447 0.0018 12 6 2.2231 -4.5585 1.0391 13 6 3.1206 -5.6096 1.0405 14 6 4.0257 -5.7475 0.0033 15 17 5.1529 -7.0678 0.0040 16 6 4.0314 -4.8332 -1.0351 17 6 3.1335 -3.7825 -1.0355 18 6 0.3717 -2.5804 -1.2490 19 9 -0.5373 -1.5170 -1.2496 20 9 1.1764 -2.5067 -2.3910 21 1 -0.4849 0.8402 -0.0004 22 1 1.5133 -4.4536 1.8463 23 1 3.1148 -6.3236 1.8507 24 1 4.7380 -4.9400 -1.8450 25 1 3.1381 -3.0685 -1.8458 26 1 -0.1730 -3.5245 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385906.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:44 Heat of formation + Delta-G solvation = -86.136882 kcal Electronic energy + Delta-G solvation = -15716.367978 eV Core-core repulsion = 12649.473629 eV Total energy + Delta-G solvation = -3066.894349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.14144 -47.07523 -40.21511 -37.46025 -35.60577 -33.24535 -31.89662 -29.40473 -26.68908 -24.09362 -23.60685 -21.75452 -18.64047 -18.15393 -17.62587 -17.31861 -16.81317 -16.42185 -16.00916 -15.40314 -14.71388 -14.47865 -14.24605 -13.95565 -13.82837 -13.45865 -13.11355 -12.97616 -12.71272 -12.51861 -12.30742 -12.29997 -11.91670 -11.62567 -11.41250 -10.91245 -10.48119 -9.87165 -9.35353 -8.02278 -6.21559 0.30269 0.46162 1.21137 1.40226 1.43525 1.53701 2.41426 2.79284 3.14494 3.53594 3.93239 4.02928 4.06665 4.25332 4.42848 4.60143 4.62351 4.76898 4.94035 5.11132 5.32824 5.35875 5.47676 5.74298 5.89620 5.95339 6.16695 6.74716 7.41707 8.88665 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033433 B = 0.006908 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.305015 B = 4052.541552 C = 4361.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.033 3.967 10 H 0.046 0.954 11 C -0.063 4.063 12 C -0.113 4.113 13 C -0.108 4.108 14 C -0.051 4.051 15 Cl -0.071 7.071 16 C -0.115 4.115 17 C -0.107 4.107 18 C 0.259 3.741 19 F -0.180 7.180 20 F -0.226 7.226 21 H 0.257 0.743 22 H 0.141 0.859 23 H 0.154 0.846 24 H 0.144 0.856 25 H 0.125 0.875 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 -10.591 0.397 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.014 3.986 10 H 0.064 0.936 11 C -0.063 4.063 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.078 4.078 15 Cl -0.042 7.042 16 C -0.133 4.133 17 C -0.125 4.125 18 C 0.204 3.796 19 F -0.161 7.161 20 F -0.208 7.208 21 H 0.066 0.934 22 H 0.158 0.842 23 H 0.172 0.828 24 H 0.162 0.838 25 H 0.143 0.857 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.768 -10.558 0.377 11.591 hybrid contribution 0.260 1.125 -0.189 1.170 sum 5.028 -9.433 0.187 10.691 Atomic orbital electron populations 1.70619 1.06531 1.26418 1.47027 1.25733 0.95794 1.02337 0.94729 0.85577 0.79067 0.79957 0.77507 1.19398 1.21066 1.20316 1.21017 0.92839 0.89937 1.53807 0.92776 1.18795 0.93198 0.92952 0.93629 0.93577 1.20181 0.96669 0.94744 0.94744 1.21217 0.99639 0.93766 0.98474 1.21180 0.94494 0.98824 0.98167 1.20945 0.95917 0.92652 0.98243 1.98333 1.60672 1.46722 1.98515 1.21178 0.99679 0.93944 0.98504 1.21273 0.94647 0.97514 0.99048 1.22533 0.84212 0.88298 0.84538 1.93154 1.67760 1.58872 1.96302 1.92768 1.75899 1.97321 1.54804 0.93353 0.84158 0.82815 0.83805 0.85675 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.76 9.50 21.45 0.20 -48.56 15 2 C 0.02 0.94 5.20 84.66 0.44 1.38 15 3 Si 0.95 43.43 29.54 68.60 2.03 45.46 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 7 C -0.54 -28.44 7.98 25.60 0.20 -28.24 15 8 H 0.05 2.90 7.60 -2.91 -0.02 2.88 15 9 C 0.03 1.55 2.36 -12.28 -0.03 1.52 15 10 H 0.05 2.25 7.87 -2.39 -0.02 2.23 15 11 C -0.06 -2.47 4.74 -19.86 -0.09 -2.56 15 12 C -0.11 -3.66 9.67 22.26 0.22 -3.45 15 13 C -0.11 -3.01 9.83 22.29 0.22 -2.79 15 14 C -0.05 -1.46 6.32 22.32 0.14 -1.32 15 15 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.79 15 16 C -0.11 -3.54 9.83 22.29 0.22 -3.32 15 17 C -0.11 -3.97 8.37 22.26 0.19 -3.78 15 18 C 0.26 11.86 4.83 71.98 0.35 12.21 15 19 F -0.18 -9.54 12.93 44.97 0.58 -8.96 15 20 F -0.23 -10.51 14.45 44.97 0.65 -9.86 15 21 H 0.26 13.84 8.31 -92.70 -0.77 13.07 15 22 H 0.14 4.10 7.94 -2.91 -0.02 4.08 15 23 H 0.15 3.34 8.06 -2.91 -0.02 3.31 15 24 H 0.14 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.13 5.04 6.38 -2.91 -0.02 5.03 15 26 H 0.09 3.45 8.14 -2.39 -0.02 3.43 15 Total: -1.00 -57.86 248.20 6.43 -51.42 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.20 Total: 2.62 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 1.85 Total: -30.34 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.20 Total: -48.56 kcal Atomic # 9 Polarization: -20.05 SS G_CDS: 1.23 Total: -18.81 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -57.86 6.43 -51.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385906.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.713 kcal (2) G-P(sol) polarization free energy of solvation -57.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds