Wall clock time and date at job start Mon Mar 30 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48508 * 109.47028 * 270.00231 * 3 2 1 5 5 H 1.48493 * 109.46961 * 29.99801 * 3 2 1 6 6 H 1.48498 * 109.47538 * 150.00253 * 3 2 1 7 7 C 1.37887 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99690 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47374 * 59.99896 * 9 7 2 11 11 C 1.50699 * 109.46956 * 180.02562 * 9 7 2 12 12 C 1.38246 * 119.98812 * 59.72583 * 11 9 7 13 13 C 1.38212 * 120.01538 * 179.72634 * 12 11 9 14 14 C 1.38360 * 119.98092 * 0.54792 * 13 12 11 15 15 Cl 1.73607 * 120.00786 * 179.74820 * 14 13 12 16 16 C 1.38345 * 119.97534 * 359.72275 * 14 13 12 17 17 C 1.38218 * 119.98976 * 0.02562 * 16 14 13 18 18 C 1.53006 * 109.47239 * 299.99759 * 9 7 2 19 19 F 1.39897 * 109.47129 * 180.02562 * 18 9 7 20 20 F 1.39903 * 109.46814 * 300.00614 * 18 9 7 21 21 H 0.96999 * 120.00118 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.99096 * 0.02562 * 12 11 9 23 23 H 1.07992 * 120.01054 * 180.26905 * 13 12 11 24 24 H 1.08003 * 120.00292 * 179.97438 * 16 14 13 25 25 H 1.07995 * 119.99185 * 180.02562 * 17 16 14 26 26 H 1.09001 * 109.47002 * 60.00070 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 6 2.2303 -3.6446 -0.0005 12 6 3.1381 -3.7775 1.0336 13 6 4.0327 -4.8311 1.0370 14 6 4.0271 -5.7463 -0.0006 15 17 5.1549 -7.0662 -0.0003 16 6 3.1221 -5.6096 -1.0380 17 6 2.2244 -4.5586 -1.0377 18 6 0.3718 -2.5805 1.2491 19 9 -0.3272 -3.7923 1.2494 20 9 1.1767 -2.5066 2.3910 21 1 -0.4850 0.8400 0.0004 22 1 3.1450 -3.0608 1.8413 23 1 4.7390 -4.9373 1.8471 24 1 3.1176 -6.3235 -1.8484 25 1 1.5177 -4.4520 -1.8473 26 1 -0.3364 -1.7520 1.2496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385910.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:46 Heat of formation + Delta-G solvation = -102.217081 kcal Electronic energy + Delta-G solvation = -15653.351986 eV Core-core repulsion = 12585.760347 eV Total energy + Delta-G solvation = -3067.591639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.66489 -45.64206 -38.79307 -36.21008 -34.11110 -31.46796 -30.53216 -27.87173 -24.85314 -22.60722 -22.23772 -20.09570 -17.01058 -16.67919 -16.07838 -15.78536 -15.23914 -14.72396 -14.56442 -13.95363 -13.15990 -13.01952 -12.93667 -12.42740 -12.21554 -12.07975 -11.67415 -11.41629 -11.14929 -11.04923 -10.82286 -10.70511 -10.47080 -10.13119 -9.73467 -9.35794 -8.77372 -8.50392 -7.93553 -6.39588 -4.45377 1.71393 1.83546 2.47357 3.16293 3.23867 3.28066 4.14039 4.26285 4.88387 5.28730 5.31796 5.38578 5.62875 5.85830 5.98596 6.03180 6.22770 6.23880 6.44714 6.61729 6.72121 6.94495 6.98464 7.36734 7.44319 7.62755 7.88579 8.58085 9.22054 10.68561 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.029235 B = 0.007262 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.535356 B = 3854.949129 C = 4280.072645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.508 4.508 8 H 0.070 0.930 9 C 0.038 3.962 10 H 0.064 0.936 11 C -0.040 4.040 12 C -0.093 4.093 13 C -0.117 4.117 14 C -0.051 4.051 15 Cl -0.096 7.096 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.246 3.754 19 F -0.238 7.238 20 F -0.218 7.218 21 H 0.271 0.729 22 H 0.142 0.858 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -6.915 -0.044 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.546 4.546 8 H 0.088 0.912 9 C 0.019 3.981 10 H 0.082 0.918 11 C -0.040 4.040 12 C -0.111 4.111 13 C -0.136 4.136 14 C -0.078 4.078 15 Cl -0.067 7.067 16 C -0.136 4.136 17 C -0.127 4.127 18 C 0.192 3.808 19 F -0.220 7.220 20 F -0.199 7.199 21 H 0.081 0.919 22 H 0.160 0.840 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.000 -6.928 -0.017 8.000 hybrid contribution 0.501 0.667 0.036 0.835 sum 4.501 -6.261 0.019 7.711 Atomic orbital electron populations 1.69705 1.06124 1.27958 1.49697 1.25059 0.95073 0.99933 0.93832 0.86305 0.79847 0.81952 0.78406 1.20308 1.20890 1.19459 1.20940 0.93569 0.88279 1.51779 0.91150 1.18912 0.92619 0.92422 0.94137 0.91760 1.20402 0.95798 0.94840 0.92937 1.21368 0.93695 0.96831 0.99244 1.21014 1.00260 0.94703 0.97634 1.20783 0.95856 0.92377 0.98744 1.98316 1.61575 1.48219 1.98595 1.20883 0.95762 0.99207 0.97729 1.21059 0.98696 0.93932 0.99000 1.22802 0.90006 0.83430 0.84549 1.92831 1.80854 1.51258 1.97032 1.92770 1.75996 1.96631 1.54542 0.91922 0.84034 0.85797 0.85829 0.85534 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.08 11.32 55.43 0.63 -22.46 15 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 15 3 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 15 4 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.51 -12.70 7.97 -34.44 -0.27 -12.97 15 8 H 0.07 1.77 7.59 -52.49 -0.40 1.37 15 9 C 0.04 0.89 2.20 -92.92 -0.20 0.68 15 10 H 0.06 1.55 7.88 -51.93 -0.41 1.14 15 11 C -0.04 -0.82 4.47 -104.62 -0.47 -1.29 15 12 C -0.09 -1.84 8.35 -39.59 -0.33 -2.17 15 13 C -0.12 -2.03 9.83 -39.55 -0.39 -2.42 15 14 C -0.05 -0.85 6.32 -39.50 -0.25 -1.10 15 15 Cl -0.10 -1.37 28.96 -51.86 -1.50 -2.87 15 16 C -0.12 -1.93 9.83 -39.55 -0.39 -2.31 15 17 C -0.11 -1.99 9.67 -39.59 -0.38 -2.37 15 18 C 0.25 5.72 4.64 37.16 0.17 5.89 15 19 F -0.24 -5.39 17.04 2.25 0.04 -5.36 15 20 F -0.22 -5.07 14.46 2.25 0.03 -5.04 15 21 H 0.27 6.64 8.31 -40.82 -0.34 6.30 15 22 H 0.14 2.88 6.40 -52.49 -0.34 2.55 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.12 1.71 8.06 -52.48 -0.42 1.29 15 25 H 0.13 2.11 7.95 -52.49 -0.42 1.70 15 26 H 0.14 3.34 6.07 -51.93 -0.32 3.03 15 LS Contribution 251.54 15.07 3.79 3.79 Total: -1.00 -25.25 251.54 -6.50 -31.75 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -1.86 Total: 1.94 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.61 Total: -16.57 kcal Atomic # 7 Polarization: -23.08 SS G_CDS: 0.63 Total: -22.46 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -25.25 -6.50 -31.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385910.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.470 kcal (2) G-P(sol) polarization free energy of solvation -25.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds