Wall clock time and date at job start Mon Mar 30 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36010 * 116.99551 * 2 1 4 4 C 1.38806 * 120.05370 * 89.99923 * 3 2 1 5 5 F 1.35104 * 120.04554 * 0.25294 * 4 3 2 6 6 C 1.38545 * 119.91213 * 179.97438 * 4 3 2 7 7 F 1.35106 * 119.98543 * 179.97438 * 6 4 3 8 8 C 1.38447 * 120.02697 * 0.02562 * 6 4 3 9 9 C 1.38246 * 120.11105 * 359.97438 * 8 6 4 10 10 C 1.50699 * 119.95653 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.47201 * 264.99839 * 10 9 8 12 12 H 1.08001 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00194 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99968 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00181 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46868 * 90.00038 * 15 13 11 17 17 H 1.48496 * 109.47039 * 209.99650 * 15 13 11 18 18 H 1.48494 * 109.47050 * 330.00437 * 15 13 11 19 19 C 1.38368 * 120.08908 * 359.97438 * 9 8 6 20 20 F 1.35100 * 120.01688 * 179.97438 * 19 9 8 21 21 H 1.08993 * 109.47510 * 299.99498 * 1 2 3 22 22 H 1.09003 * 109.47387 * 60.00464 * 1 2 3 23 23 H 1.09006 * 109.46435 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.94941 * 179.97438 * 8 6 4 25 25 H 1.08999 * 109.47147 * 24.99837 * 10 9 8 26 26 H 1.09000 * 109.47158 * 145.00378 * 10 9 8 27 27 H 0.96998 * 120.00273 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3619 1.8313 1.2014 5 9 2.0608 1.2289 2.3726 6 6 2.9913 3.0656 1.1980 7 9 3.2986 3.6701 2.3666 8 6 3.3045 3.6802 -0.0023 9 6 2.9907 3.0643 -1.1995 10 6 3.3336 3.7362 -2.5041 11 6 2.1383 4.5076 -3.0013 12 1 1.2220 4.5114 -2.4296 13 6 2.2147 5.2095 -4.1856 14 7 3.3306 5.2055 -4.8816 15 14 0.7333 6.1663 -4.8016 16 1 0.7807 7.5507 -4.2661 17 1 0.7537 6.2087 -6.2858 18 1 -0.5119 5.5004 -4.3423 19 6 2.3631 1.8311 -1.2016 20 9 2.0566 1.2307 -2.3724 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0278 -0.0005 24 1 3.7947 4.6426 -0.0036 25 1 4.1694 4.4192 -2.3523 26 1 3.6104 2.9812 -3.2399 27 1 3.3843 5.6990 -5.7149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260452005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:26 Heat of formation + Delta-G solvation = -154.860959 kcal Electronic energy + Delta-G solvation = -17678.419410 eV Core-core repulsion = 14180.208586 eV Total energy + Delta-G solvation = -3498.210824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.28162 -48.42335 -48.35694 -39.32613 -37.37624 -33.45014 -31.16630 -29.74822 -27.25357 -26.88244 -23.74062 -22.69932 -21.15155 -18.08790 -17.87199 -17.52845 -16.68909 -16.36316 -16.19406 -15.46462 -15.34439 -14.79111 -14.69114 -14.61233 -14.30480 -14.03780 -13.66734 -12.61343 -12.47945 -12.18702 -12.13232 -11.48929 -11.34107 -11.15078 -10.76057 -10.71102 -10.17951 -9.81785 -9.64349 -8.56972 -8.54744 -8.11261 -6.19102 -4.24830 0.95625 1.08843 3.21298 3.22983 3.30085 3.33977 3.60835 3.98567 4.31026 4.33182 4.68221 5.02017 5.04737 5.17023 5.26948 5.33673 5.47869 5.63467 5.89429 6.05920 6.33280 6.37029 6.77804 7.27026 7.37470 7.41376 7.73811 8.06342 8.77904 9.40127 10.90885 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.007429 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.320035 B = 3768.121581 C = 4299.869719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.048 3.952 4 C 0.046 3.954 5 F -0.125 7.125 6 C 0.069 3.931 7 F -0.129 7.129 8 C -0.108 4.108 9 C -0.036 4.036 10 C 0.049 3.951 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.899 3.101 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.103 3.897 20 F -0.112 7.112 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.157 0.843 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -5.898 9.337 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.002 3.998 4 C 0.025 3.975 5 F -0.103 7.103 6 C 0.048 3.952 7 F -0.107 7.107 8 C -0.126 4.126 9 C -0.038 4.038 10 C 0.012 3.988 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.083 3.917 20 F -0.091 7.091 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.175 0.825 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.715 -6.043 9.211 11.346 hybrid contribution -1.031 0.561 -0.119 1.180 sum -3.746 -5.481 9.091 11.258 Atomic orbital electron populations 1.23120 0.78389 1.03594 1.01236 1.86104 1.20486 1.22850 1.94104 1.18275 1.02795 0.88834 0.89942 1.17455 1.06165 0.92426 0.81446 1.91482 1.91519 1.82822 1.44513 1.17490 1.03371 0.91589 0.82726 1.91506 1.91168 1.82516 1.45557 1.20981 1.01596 1.01489 0.88580 1.20728 0.92964 0.91093 0.98986 1.18423 0.98246 0.95834 0.86252 1.20926 0.97682 1.30455 1.06775 0.92324 1.24971 0.96257 0.96353 0.96325 1.69936 1.25836 1.41725 1.15185 0.86478 0.82671 0.80206 0.78052 1.20403 1.20972 1.19745 1.17626 1.01400 0.92212 0.80476 1.91530 1.90497 1.82473 1.44557 0.93319 0.92742 0.88343 0.82520 0.93927 0.93922 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.13 101.05 1.12 1.52 15 2 O -0.32 -5.33 10.15 -19.77 -0.20 -5.53 15 3 C 0.05 0.84 5.73 -39.15 -0.22 0.62 15 4 C 0.05 0.78 7.31 -39.26 -0.29 0.50 15 5 F -0.12 -2.08 17.02 2.25 0.04 -2.04 15 6 C 0.07 1.15 7.30 -39.39 -0.29 0.86 15 7 F -0.13 -2.08 17.18 2.25 0.04 -2.04 15 8 C -0.11 -1.87 9.65 -39.50 -0.38 -2.25 15 9 C -0.04 -0.73 5.07 -104.57 -0.53 -1.26 15 10 C 0.05 1.17 4.87 -29.03 -0.14 1.03 15 11 C -0.52 -13.71 9.09 -34.44 -0.31 -14.02 15 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 14 N -0.89 -25.03 13.29 55.43 0.74 -24.29 15 15 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 19 C 0.10 2.02 7.25 -39.31 -0.28 1.73 15 20 F -0.11 -2.35 16.40 2.25 0.04 -2.31 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.16 2.46 8.06 -52.49 -0.42 2.04 15 25 H 0.04 1.03 8.05 -51.93 -0.42 0.61 15 26 H 0.04 1.09 7.79 -51.93 -0.40 0.69 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -28.01 262.15 -3.90 -31.91 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -2.05 Total: -5.60 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.42 Total: -9.66 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.74 Total: -24.29 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.20 Total: -5.53 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.01 -3.90 -31.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260452005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.954 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds