Wall clock time and date at job start Mon Mar 30 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36010 * 116.99551 * 2 1 4 4 C 1.38806 * 120.05370 * 89.99923 * 3 2 1 5 5 F 1.35104 * 120.04554 * 0.25294 * 4 3 2 6 6 C 1.38545 * 119.91213 * 179.97438 * 4 3 2 7 7 F 1.35106 * 119.98543 * 179.97438 * 6 4 3 8 8 C 1.38447 * 120.02697 * 0.02562 * 6 4 3 9 9 C 1.38246 * 120.11105 * 359.97438 * 8 6 4 10 10 C 1.50699 * 119.95653 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.47201 * 264.99839 * 10 9 8 12 12 H 1.08001 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00194 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99968 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00181 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46868 * 90.00038 * 15 13 11 17 17 H 1.48496 * 109.47039 * 209.99650 * 15 13 11 18 18 H 1.48494 * 109.47050 * 330.00437 * 15 13 11 19 19 C 1.38368 * 120.08908 * 359.97438 * 9 8 6 20 20 F 1.35100 * 120.01688 * 179.97438 * 19 9 8 21 21 H 1.08993 * 109.47510 * 299.99498 * 1 2 3 22 22 H 1.09003 * 109.47387 * 60.00464 * 1 2 3 23 23 H 1.09006 * 109.46435 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.94941 * 179.97438 * 8 6 4 25 25 H 1.08999 * 109.47147 * 24.99837 * 10 9 8 26 26 H 1.09000 * 109.47158 * 145.00378 * 10 9 8 27 27 H 0.96998 * 120.00273 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3619 1.8313 1.2014 5 9 2.0608 1.2289 2.3726 6 6 2.9913 3.0656 1.1980 7 9 3.2986 3.6701 2.3666 8 6 3.3045 3.6802 -0.0023 9 6 2.9907 3.0643 -1.1995 10 6 3.3336 3.7362 -2.5041 11 6 2.1383 4.5076 -3.0013 12 1 1.2220 4.5114 -2.4296 13 6 2.2147 5.2095 -4.1856 14 7 3.3306 5.2055 -4.8816 15 14 0.7333 6.1663 -4.8016 16 1 0.7807 7.5507 -4.2661 17 1 0.7537 6.2087 -6.2858 18 1 -0.5119 5.5004 -4.3423 19 6 2.3631 1.8311 -1.2016 20 9 2.0566 1.2307 -2.3724 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0278 -0.0005 24 1 3.7947 4.6426 -0.0036 25 1 4.1694 4.4192 -2.3523 26 1 3.6104 2.9812 -3.2399 27 1 3.3843 5.6990 -5.7149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260452005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:26 Heat of formation + Delta-G solvation = -170.111337 kcal Electronic energy + Delta-G solvation = -17679.080716 eV Core-core repulsion = 14180.208586 eV Total energy + Delta-G solvation = -3498.872130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.63944 -49.99718 -49.70899 -40.70225 -38.76759 -35.36585 -32.87915 -31.14130 -29.00957 -28.01836 -25.56880 -24.09618 -22.74915 -19.50444 -19.29183 -18.94573 -18.57944 -17.83132 -17.59427 -16.91752 -16.71308 -16.50356 -16.21545 -15.94526 -15.55473 -15.47564 -15.12720 -14.45207 -14.21681 -13.66217 -13.39190 -13.22906 -12.85520 -12.70817 -12.54095 -12.37494 -11.83351 -11.53412 -11.27984 -10.61475 -9.96602 -9.63821 -8.22987 -6.35648 -0.44060 -0.36859 1.42566 1.43356 1.53769 1.85216 2.19113 2.41469 2.63247 2.87762 3.10907 3.27175 3.56478 3.61311 4.09047 4.28745 4.34272 4.43939 4.61669 4.66073 4.78314 4.89483 5.26159 5.36377 5.51459 5.69160 6.05354 6.09090 6.74444 7.33245 8.87111 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.007429 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.320035 B = 3768.121581 C = 4299.869719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.058 3.942 4 C 0.054 3.946 5 F -0.119 7.119 6 C 0.083 3.917 7 F -0.120 7.120 8 C -0.097 4.097 9 C -0.052 4.052 10 C 0.057 3.943 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.087 3.913 20 F -0.127 7.127 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.130 0.870 24 H 0.173 0.827 25 H 0.033 0.967 26 H 0.014 0.986 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -5.847 10.680 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C 0.012 3.988 4 C 0.033 3.967 5 F -0.097 7.097 6 C 0.063 3.937 7 F -0.099 7.099 8 C -0.115 4.115 9 C -0.053 4.053 10 C 0.020 3.980 11 C -0.571 4.571 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.067 3.933 20 F -0.105 7.105 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.149 0.851 24 H 0.191 0.809 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.867 -5.998 10.573 12.756 hybrid contribution -0.684 0.464 -0.444 0.938 sum -4.551 -5.533 10.129 12.407 Atomic orbital electron populations 1.23425 0.76105 1.05922 1.01546 1.86079 1.22611 1.22149 1.94070 1.18164 1.02345 0.88904 0.89373 1.17419 1.05591 0.92326 0.81361 1.91504 1.91394 1.82740 1.44073 1.17304 1.02527 0.91226 0.82643 1.91536 1.90984 1.82353 1.45001 1.20992 1.00886 1.01827 0.87834 1.20355 0.94996 0.91749 0.98189 1.18129 0.97312 0.94864 0.87705 1.21273 0.98392 1.30471 1.06971 0.92322 1.25813 0.98912 0.97375 0.96598 1.70047 1.27815 1.42807 1.15691 0.85485 0.79343 0.79090 0.77418 1.19389 1.20772 1.19183 1.17746 1.02363 0.92465 0.80702 1.91485 1.90798 1.82740 1.45514 0.92169 0.93248 0.85144 0.80931 0.94864 0.96754 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.13 113.37 1.26 1.80 15 2 O -0.33 -10.51 10.15 -93.67 -0.95 -11.46 15 3 C 0.06 1.99 5.73 22.55 0.13 2.12 15 4 C 0.05 1.72 7.31 22.48 0.16 1.88 15 5 F -0.12 -3.62 17.02 44.97 0.77 -2.86 15 6 C 0.08 2.59 7.30 22.39 0.16 2.76 15 7 F -0.12 -3.53 17.18 44.97 0.77 -2.76 15 8 C -0.10 -3.22 9.65 22.32 0.22 -3.01 15 9 C -0.05 -2.06 5.07 -19.83 -0.10 -2.16 15 10 C 0.06 2.77 4.87 29.10 0.14 2.92 15 11 C -0.53 -28.33 9.09 25.60 0.23 -28.10 15 12 H 0.06 3.04 7.74 -2.91 -0.02 3.02 15 13 C 0.01 0.66 5.46 84.65 0.46 1.13 15 14 N -0.92 -52.85 13.29 21.45 0.28 -52.56 15 15 Si 0.96 42.13 29.54 68.60 2.03 44.15 15 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 19 C 0.09 3.40 7.25 22.44 0.16 3.56 15 20 F -0.13 -5.40 16.40 44.97 0.74 -4.66 15 21 H 0.06 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.13 2.17 8.14 -2.38 -0.02 2.15 15 24 H 0.17 5.14 8.06 -2.91 -0.02 5.12 15 25 H 0.03 1.65 8.05 -2.39 -0.02 1.63 15 26 H 0.01 0.76 7.79 -2.39 -0.02 0.75 15 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 Total: -1.00 -58.95 262.15 7.68 -51.28 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.21 Total: -4.02 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 2.83 Total: -17.11 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.28 Total: -52.56 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.95 Total: -11.46 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 2.28 Total: -10.28 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -58.95 7.68 -51.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260452005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.836 kcal (2) G-P(sol) polarization free energy of solvation -58.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds